How bacteria could transform sexual assault investigations

Microbiome forensics may offer a groundbreaking method to track sexual assault suspects through unique bacterial signatures left during intercourse. These microbial “footprints” can persist for days, detection even possible when DNA evidence is scarce. This new identification method could therefore assist a large number of victims, especially in cases where DNA evidence is absent or degraded.

The vaginal microbiota The urinary microbiota

For years, forensic investigations in sexual assault crime cases have leaned heavily on the analysis of human male DNA, often from sperm, found on the victim. But this isn't always straightforward. Getting enough viable sperm can be tricky, especially if sampling occurs more than 48 hours after an assault. This is where the microbiome – the vast community of microbes living in and on us – steps onto the forensic stage, offering a potential new avenue for detection and identifying perpetrators in sexual crime investigations. 

This new study 1 builds on previous work showing that microbial communities differ between body sites and individuals. If these unique microbial signatures transfer during sexual intercourse, could they leave a trace that traditional DNA methods might miss? That's the core question here, specifically focusing on the " (sidenote: Sexome The collection of microbial signatures exchanged specifically during sexual intercourse. ) " – the microbial exchange during sexual intercourse.

Science is offering new opportunities to address unsolved or difficult cases involving sexual violence. Victims of sexual crimes may benefit from this scientific progress.

Sex and your unique bacterial signature

The researcher recruited 12 consensual male/female couples participating in this science-driven study. Participants collected samples from their genital areas before and after penetrative sexual intercourse. The "before" samples were taken after a period of abstinence (at least 2-4 days). The "after" samples were collected 3 to 12 hours post-intercourse, mimicking a forensic sampling scenario. They then used full-length (sidenote: 16S rRNA sequencing A method that reads a bacterial “barcode” gene to identify and differentiate species. ) to analyse each sample. Think of the 16S gene as a bacterial barcode allowing for species-level resolution, which is absolutely critical for forensic applications.

As expected, male penis skin samples were generally more diverse than female vaginal samples. Couples showed different levels of microbial similarity after sex depending on their baseline profiles. So being in a couple has a significant impact on the overall composition of bacteria found.

They also saw a clear disruption to the microbial communities in both male and female samples after intercourse. Bacterial types transferred between partners.

Bacteria typically found on male skin (like Corynebacterium, Staphylococcus, Finegoldia) increased in female samples, while key vaginal bacteria (Lactobacillus species) increased in male samples.

Urethral microbiota: a better understanding of male urinary tract infections

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Surprising findings with forensic impact

What was surprising, even with condoms, bacteria still transfer, mostly woman to man, leaving microbial evidence behind them. Unique female-only bacteria stayed on a male partner for five days despite hygiene, extending forensic detection beyond sperm DNA. Plus, novel germs from gut or skin can appear in the genitals after sex, potentially offering fresh contact clues. This could add new dimensions to sexual assault cases.

Forensic promise: a new tool for justice

The key takeaway is clear: specific bacterial signatures transfer during sexual intercourse. Using high-resolution sequencing techniques allows forensic scientists to potentially identify unique bacterial types.

The study shows compelling evidence that microbiome analysis could offer a valuable additional tool for sexual assault investigations, especially when male DNA is limited or absent. It also demonstrates that the microscopic exchange of bacteria during sexual contact leaves a detectable, high-resolution trace – a " (sidenote: Sexome The collection of microbial signatures exchanged specifically during sexual intercourse. ) " signature – that holds significant promise for helping forensic investigators pursue justice. 

The vaginal microbiota

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The HACK index: identifying keystone gut species for better patient outcomes

Defining a healthy gut microbiome is challenging due to individual variability. The HACK index ranks 201 gut bacteria by prevalence, stability, and disease links, giving clinicians a robust, reproducible tool to assess and optimize gut health. This article is part of a broader effort to define the human gut microbiome and support healthcare professionals with data-driven, practical tools. 

If you are reading this piece, you probably know that the microbiome is foundational to health across so many systems, right from metabolism to immunity and even cognition. But defining what a truly "healthy" gut looks like – one that's not just present but resilient and linked to wellness – has been a massive challenge given its incredible variability across people and places.

A new study published in Cell Reports 1 brings a fresh view with the Health-Associated Core Keystone (HACK) index. This isn't just another list of microbes; it's a single, robust ranking of 201 key gut bacterial species based on their consistent association with crucial aspects of host and microbiome health.

Decoding the HACK Index: What makes a Keystone?

The researchers built this new ranking using a staggering dataset of over 45,000 gut microbiomes from 141 study cohorts across 42 countries and spanning 28 different disease categories. They ranked 201 common gut taxa, microbes, by scoring them on three critical properties:

  1. Core Association: How prevalent and consistently associated with the community composition a taxon is in non-diseased individuals. This was assessed using a novel 'Remove-Renormalize-Relate (3R)' approach on over 18,000 non-diseased samples
     
  2. Longitudinal Stability: How strongly a taxon's abundance is associated with less change in the microbiome over time within individuals. This used data from over 9,000 longitudinal samples.
     
  3. Health Association: How consistently a taxon is negatively associated with disease across multiple categories. This involved analysing over 18,000 samples from disease-control cohorts covering 28 conditions.

These three scores were combined into the final HACK index for each taxon. Analysis confirmed the robustness of this index across sequencing techniques and lifestyles. The HACK ranking held strong regardless of sequencing technology (WGS vs. 16S) and across industrialized and non-industrialized populations, and was validated in 14 independent cohorts. This robustness suggests it captures something fundamentally linked to health, transcending geographical and technical differences.

Not all core members are equal

The study revealed several surprising insights that challenge common assumptions in microbiome research.

Perhaps most striking is the finding that some taxa consistently identified as core-associated – meaning prevalent and tightly linked to the community in non-diseased guts – were also previously linked to multiple diseases. Table-based analysis revealed that Collinsella aerofaciens is one such example. This highlights that simply being a common resident doesn't guarantee a health benefit and reinforces the importance of combining community association with abundance stability and disease association – as the (sidenote: HACK Index A composite ranking of 201 gut bacterial species based on prevalence/community association, stability, and disease associations. ) does.

Clinical resource spotlight: International Microbiota Observatory

HACK gut microbiota isn’t the only data-centric tool helping to enrich knowledge of the gut microbiota.

The International Microbiota Observatory provides global data insights from over 30 countries, tracking the evolution of the human gut microbiome across populations and disease states.

Clinicians can leverage this resource alongside the HACK index to contextualize patient microbiome analysis across regions.

From diet to therapeutics

So, what does this mean for clinical practice? The HACK index provides a powerful new tool.

The study showed that a simple score derived from the mean ranked abundance of the top 17 HACK taxa (HACK-top-17-score) performed comparably or better than existing microbiota/microbiome health indices in distinguishing between diseased and non-diseased states, as well as stable and unstable microbiomes. 

In addition, analysis showed a significant positive correlation was observed between a taxon's HACK index and its association with a positive response to immune checkpoint inhibitor (ICT) therapy. This suggests the HACK index could potentially help identify gut microbes most likely to support therapeutic success in oncology and beyond.

Moreover, the index also links microbial patterns to diet. Higher HACK scores correlated with microbes more responsive to Mediterranean-style food interventions, indicating diet-based therapeutic potential.

Diet is not only a modifiable factor, but also a diagnostic lens for understanding the microbiome’s response to specific food patterns.

Green Mediterranean diet: what links between cardiometabolic health and gut microbiota?

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This article sheds new light on the intricate interplay between human microbiota and health. The HACK index marks a significant step toward a functional, clinically applicable definition of a healthy gut. And while more work is needed, especially in strain-level analysis, this robust and reproducible analysis framework already opens new paths for diagnostic tools and therapeutic targets – especially when integrated with human dietary patterns and response to medical interventions.

Analysis of such tools and indexes through large-scale microbiome data and clinical application tables is now essential in advancing personalized medicine. As gut research evolves, tools like the HACK index could guide interventions grounded not just in microbial presence, but in functional stability – from food-based strategies to immune-based treatments.

Professional toolbox: explore more clinical resources

Need support applying these concepts in practice? The Biocodex Microbiota Institute offers a dedicated toolbox for professionals, with accessible overviews, videos, infographics and diagnostic tools. All science-based educational content. Have a look!

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Surprising effects of menopause on microbiota

Hot flashes, mood swings, vaginal dryness... The signs of menopause are by now well known. But according to a study 1 on the links between diminishing sex hormones and oral, vaginal, and gut microbiota, they may only be the tip of the iceberg. 

The vaginal microbiota The gut microbiota The ENT microbiota

How do the hormonal changes associated with menopause alter oral, gut, and urogenital microbiota composition? To answer this question, a team of Spanish researchers analyzed more than 100 studies on the subject. 

26% of the world’s female population is over the age of 50 (a 10% increase since 2011) ²

+ 21 years The average life expectancy of a 60-year-old woman ²

Published in the journal npj Women Health 1, their analysis shows that the decline in sex hormones (estrogen and progesterone) significantly alters mucous membranes, with multiple impacts on the body’s various bacterial communities. Unsurprisingly, this has an impact on women’s health.

45 to 55 The age at which the menopausal transition begins for most women ³

20% to 25% of postmenopausal women suffer from severe disorders that affect their quality of life⁴

Oral microbiota

Changes related to declining estrogen levels are particularly noticeable in the oral cavity. In addition to changes in the mucous membrane that disrupt microbial communities, there is a decrease in the quantity and quality of saliva, which becomes more acidic. 

These two alterations can promote inflammation and colonization of the oral flora by pathogenic bacteria. This disrupted microbiota is less balanced, increasing the risk of lesions and diseases such as candidiasis (proliferation of Candida albicans), gingivostomatitis (inflammation of the gums), and angular cheilitis (inflammation of the corners of the mouth).

The ENT microbiota

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Vaginal microbiota

The decline in estrogen reduces the glycogen content of the cells in the vaginal wall, glycogen being the preferred food source for lactobacilli. These bacteria usually dominate the vaginal microbiota, secreting lactic acid which acidifies the vagina and prevents the proliferation of pathogens. 

When lactobacilli become less abundant, the vagina becomes less acidic and bacterial diversity increases. This is known as the “menopause paradox.” This imbalance in the vaginal flora opens the door to disorders such as inflammation, or recurrent infections such as bacterial vaginosis, and may contribute to endometrial cancer. It may also lead to persistent dryness. 

The vaginal microbiota

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Gut microbiota

Studies to date do not tell us whether the decline in estrogen affects the balance of the gut microbiota. However, we do know that postmenopausal women have lower levels of bacteria from the Ruminococcus family, some of which produce beneficial short-chain fatty acids ( (sidenote: Short chain fatty acids (SCFA) Short chain fatty acids (SCFA) are a source of energy (fuel) for an individual’s cells. They interact with the immune system and are involved in communication between the intestine and the brain. Silva YP, Bernardi A, Frozza RL. The Role of Short-Chain Fatty Acids From Gut Microbiota in Gut-Brain Communication. Front Endocrinol (Lausanne). 2020;11:25. ) ). They also have a greater abundance of Prevotella and Sutterella, two bacteria associated with obesity.

This imbalance in the gut flora may contribute to certain metabolic, digestive, and immune disorders. A balanced gut flora appears to play an essential role in overall health, including hormone regulation.

The gut microbiota

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Take care of your microbiota

While further studies are needed before specific treatments targeting microorganisms in the gut, vagina, and mouth can be recommended for postmenopausal women (e.g. probiotics tailored to each flora, dietary changes, etc.), limiting damage by taking care of your microbiota seems a good place to start. 

A varied diet rich in fiber and fermented foods, daily physical activity, if possible in a natural environment, giving up smoking and alcohol, and using antibiotics as sparingly as possible: all have proven beneficial effects on the microbiota.

A healthy, balanced lifestyle is thus a sure way to support the balance of the microbial flora during menopause.

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How menopause impacts microbiota

The oral, vaginal, and gut microbiomes undergo significant changes during menopause. A new study suggests this may have consequences for women’s health.

A narrative review by Spanish researchers has found that the drop in estrogen associated with the menopause significantly disrupts microbiota, with significant repercussions on women’s health. 1 In particular, it leads to significant changes in the oral epithelium (thinning, drying out, etc.), which can affect oral health and the microbial ecosystem living on the mouth’s surface.

This alteration of the oral microbiome is frequently accompanied by a variety of oral symptoms in post-menopausal women.

Oral cavity sees significant change

Saliva becomes less abundant and more acidic, which not only increases the risk of caries and periodontal disease but also disrupts the oral microbiota. (sidenote: Dysbiosis Generally defined as an alteration in the composition and function of the microbiota caused by a combination of environmental and individual-specific factors. Levy M, Kolodziejczyk AA, Thaiss CA, et al. Dysbiosis and the immune system. Nat Rev Immunol. 2017;17(4):219-232.   ) of the oral microbiota has also been observed, which is likely to promote colonization by pathogenic bacteria and the onset of mucosal lesions such as angular cheilitis, an inflammation of the corners of the mouth.

Since the cells of the salivary glands and gums carry estrogen receptors involved in immunity, fluctuating hormone levels can cause inflammation of the mucous membranes. This can affect the balance of microorganisms and promote diseases such as candidiasis, which is linked to the proliferation of Candida albicans, or gingivostomatitis, the simultaneous inflammation of the gums and oral mucosa.

Taking these changes in the flora into account could enrich oral health prevention strategies for older women.

Cortisol also affects oral bacteria

Salivary cortisol is a stress marker that is higher in post-menopausal women suffering from psychosomatic disorders of the head and neck (aphthous stomatitis, atypical facial pain, lichen planus, burning mouth syndrome, dry mouth). It may directly alter oral bacterial activity and increase the risk of periodontal disease. For example, one study showed that in the presence of cortisol, certain bacteria were more active, such as Leptotrichia goodfellowii (associated with gingivitis) or members of the Fusobacteria phylum. The study highlights that this hormonal regulation of the microbiome may also extend to the gut-brain axis. These gut disturbances may play a role in age-related inflammatory or neurodigestive disorders.

Greater bacterial diversity in the vaginal microbiota

In the vagina, the menopause is accompanied by a decrease in the dominance of lactobacilli, which normally acidify the vagina, thereby preventing the proliferation of pathogens or an increase in bacterial diversity. This is the famous “ (sidenote: Menopause paradox The menopause paradox, characterized by a decrease in microbial dominance but an increase in richness observed in the vaginal niche, may apply to other body sites within the microbiome community. ) .” 

These changes increase susceptibility to bacterial vaginosis and may contribute to diseases such as endometrial cancer. Post-menopausal women with severe symptoms of vaginal dryness, (sidenote: Dyspareunia Recurrent or persistent genital pain during sexual intercourse. ) (pain during intercourse), and vaginal pain, often present greater bacterial diversity than women who do not suffer from these symptoms.

Estrogen and microbiota: a dynamic two-way relationship

Certain bacteria in the microbiota are thought to be able to “deconjugate” estrogen bound to proteins in the blood, thereby rendering these hormones biologically active. They are known as the “estrobolome.” The estrobolome can modify the availability of estrogen and thus influence the physiological processes associated with it. But that’s not all...

Menopausal shift

Menopausal shift includes physiological and histological changes in the host, leading to alterations in the composition and metabolism of the resident microbial community, due to hormonal changes during the aging of women.

While certain bacteria in the gingival and gut microbiota can modulate the effect of estrogens by breaking them down, hormones can in turn directly modulate the activity of bacteria: bacteriostatic or bactericidal effects, stimulation of growth or proteolytic activity, modulation of biofilm formation, etc.

They also pave the way for targeted interventions, such as the use of probiotics to restore protective flora.
All of these bidirectional dynamics between sex hormones and bacteria can be completely disrupted during the menopause, with significant repercussions on women’s health. 

These interactions underline the importance of a systemic approach to understanding microbiota.

Towards better care for post-menopausal women

According to the researchers, there are still many unknowns about the interactions between sex hormones and the oral, gut, and urogenital microbiomes. However, with advances in science, new studies should soon give rise to previously unexplored therapeutic avenues (dietary changes, probiotics, personalized interventions, etc.).

The ultimate aim is to alleviate the symptoms of menopause and improve women’s overall health. Stay tuned!

How to talk about women's health: Pr. Graziottin's advice

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Could microbiota be the cause of pelvic pain?

Some women suffer from a double blow of chronic pelvic pain and disproportionate pain. Are a few bacteria responsible for making the bladder, vagina, and rectum so sensitive?

The gut microbiota The vaginal microbiota

You may not be aware that all organs which come into contact with the outside world, including the bladder (no, urine is not sterile) and the vagina (dominated by lactobacilli), host a resident microbiota that contributes to the organ’s proper functioning or, in the event of dysbiosis, to disease, including the sensation of pain.

To find out more, researchers examined 30 women suffering from (sidenote: Chronic pelvic pain Persistent, noncyclic pain perceived to be in structures related to the pelvis and lasting more than six months. Often no specific etiology can be identified, and it can be conceptualized as a chronic regional pain syndrome or functional somatic pain syndrome. It is typically associated with other functional somatic pain syndromes (e.g., irritable bowel syndrome, nonspecific chronic fatigue syndrome) and mental health disorders (e.g., posttraumatic stress disorder, depression). Explore Speer LM, Mushkbar S, Erbele T. Chronic Pelvic Pain in Women. Am Fam Physician… ) (CPP), half of whom were (sidenote: Pelvic hypersensitivity Decreased cortical nociceptive thresholds leading to discomfort or pain from stimuli that are not usually painful, such as bladder filling; exaggerated perception of digestive system function; vulvar burning on contact; and abnormally intense pain from stimuli that are usually painful. Explore CHU Dijon ) , where pain could be triggered by the mere rubbing of underwear or a full bladder. 1

26% Chronic pelvic pain affects an estimated 26% of the world's female population. ²

3 months Pain is considered chronic when it persists for more than three months. ³

4% to 16% of women are affected by CPP. This is similar to the prevalence of migraine or asthma. ⁴

Unhealthy microbiota

Women suffering from CPP with hypersensitivity have very low pain thresholds: even the slightest pressure on the bladder, for example, is enough to trigger pain. Moreover, the pain experienced is not only more intense but also more prolonged. In other words, their suffering is twofold.

These women have altered gut, urinary (bladder), and vaginal microbiota, with a general decline in beneficial lactobacilli: less Lactobacillus in the gut; a more diverse vaginal microbiota (not a good sign), enriched in Streptococcus and Prevotella, and depleted of other bacterial groups; and a more diverse urinary microbiota (again, not good), with Clostridium sensu stricto 1 predominant.

Focus on diseases associated with chronic pelvic pain:

Chronic pelvic pain affects around 26% of women worldwide and is often associated with other disorders, such as:

∙ Endometriosis, a gynecological condition where tissue similar to the uterus lining grows outside the uterus, causing pain and infertility.

∙ Irritable bowel syndromee (IBS), a bowel condition characterized by abdominal pain, bloating, diarrhea, or constipation, often exacerbated by gut dysbiosis.

∙ Other chronic pain syndromes and mental health disorders (post-traumatic stress disorder, depression, etc.).

In all these cases, the microbiota – gut, vaginal, or urinary – play a potential role in the progression of the disease which deserves special attention.

Specific bacteria that are the signature of pain

Even more troubling: some of these bacteria that are over- or underrepresented in hypersensitive women are directly associated with clinical symptoms. For example, less Akkermansia or Faecalibacterium in the gut means more rectal pain. Less L. jensenii in the vagina means more painful periods and a smaller bladder capacity. Less Lactobacillus in the bladder means impaired functioning.

Is the vaginal microbiota to blame for painful periods?

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Rebalance the microbiota to reduce pain?

Ultimately, the researchers managed to establish bacterial signatures of sensitivity based on bacteria from the gut, vaginal, and urinary flora. But are they the cause or consequence of the pain?

At this stage, it is not possible to say. But these findings open up promising avenues for research: probiotics could in the future be a therapeutic solution for these women, as could prebiotics, synbiotics, and nutritional approaches. By acting on the microbiota, it may be possible to relieve certain forms of pain.

Could rebalancing these microbiomes with probiotics not only alleviate pain but also address the root causes of the disease?

Further reading

A number of studies are currently investigating the role of probiotics in the treatment of diseases such as endometriosis, irritable bowel syndrome (IBS), and other disorders involving persistent intestinal inflammation.

What is the difference between prebiotics, probiotics and postbiotics?

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A handful of bacteria are the signature of chronic pain

Researchers have identified gut, vaginal, and urinary microbial signatures that are biomarkers for – and possibly even contributors to – pelvic organ hypersensitivity in cases of chronic pelvic pain. 1

The pelvic floor muscles can cause many sexual and genital symptoms. How can we cure these symptoms?

We know the gut microbiota contributes to visceral hypersensitivity through the production of bacterial metabolites. But what about other organs and microbiota? Do urinary or vaginal microbiota contribute to bladder or vaginal pain sensitivity? To find out more, researchers studied 30 patients suffering from (sidenote: Chronic pelvic pain Persistent, noncyclic pain perceived to be in structures related to the pelvis and lasting more than six months. Often no specific etiology can be identified, and it can be conceptualized as a chronic regional pain syndrome or functional somatic pain syndrome. It is typically associated with other functional somatic pain syndromes (e.g., irritable bowel syndrome, nonspecific chronic fatigue syndrome) and mental health disorders (e.g., posttraumatic stress disorder, depression). Explore Speer LM, Mushkbar S, Erbele T. Chronic Pelvic Pain in Women. Am Fam Physician… ) (CPP), half of whom also suffered from (sidenote: Pelvic hypersensitivity Decreased cortical nociceptive thresholds leading to discomfort or pain from stimuli that are not usually painful, such as bladder filling; exaggerated perception of digestive system function; vulvar burning on contact; and abnormally intense pain from stimuli that are usually painful. Explore CHU Dijon ) in a pelvic organ.

Impaired microbiota in cases of hypersensitivity

Pain pressure thresholds were found to be much lower in women with CPP and hypersensitivity in the vagina, rectum, bladder, and perineum than in women suffering from CPP with no associated hypersensitivity. After stimulation, these women experience not only more intense pain but also longer-lasting pain in the perineal muscles and bladder.
 

26% Chronic pelvic pain affects an estimated 26% of the world's female population. ²

50%-90% Musculoskeletal pain and dysfunction are found in 50% to 90% of patients with CPP. ²

In terms of microbiota, hypersensitive women show signs of dysbiosis, including a decline in beneficial lactobacilli. The digestive microbiota is depleted in Lactobacillus; the vaginal microbiota is more diverse (whereas optimal vaginal flora is typically not very diverse), considerably enriched in Streptococcus and Prevotella, and depleted in Lactobacillus jensenii and Gardnerella vaginalis; while the urinary microbiota is also more diverse and enriched in Clostridium sensu stricto 1.

For more information:

In patients suffering from endometriosis, this dysbiosis may be exacerbated, contributing to the amplification of painful symptoms, particularly during menstruation.
 

Dysbiosis linked to clinical characteristics

Above all, the relative abundance of certain bacteria in hypersensitive individuals is associated with clinical characteristics and increased organ sensitivity:

  • A low intestinal abundance of Akkermansia, Desulfovibrio, Faecalibacterium, and CAG-352 is associated with increased rectal pain intensity;
  • in the vagina, a lack of Lactobacillus jensenii is associated with more dysmenorrhea and a loss of bladder capacity, while an increased abundance of two Prevotella species is associated with the occurrence of dysmenorrhea;
  • in the urinary microbiota, a lower abundance of Lactobacillus is correlated with reduced bladder capacity and poorer quality of life.

For more information:

Changes in the microbiota are also present in other gynecological conditions such as endometriosis, and in gastroenterological conditions such as irritable bowel syndrome (IBS), where dysbiosis is a recognized pathophysiological factor.

Endometriosis and Microbiota: what are the links ?

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40% Chronic pelvic pain accounts for 40% of laparoscopies and 12% of hysterectomies in the US annually even though its origin is not gynecologic in 80% of patients. ²

A signature of sensitivity

Lastly, the researchers identified gut, vaginal, and urinary bacterial signatures that serve as biomarkers for pelvic hypersensitivity in women suffering from chronic pelvic pain.

Are these bacteria the cause of the disease? Preclinical animal models will be required to validate any causal relationship. Nevertheless, this work paves the way for nutritional and therapeutic approaches where prebiotics, probiotics, and synbiotics targeting various urogenital microbiota have the potential to improve sensitization in women with CPP.

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Microbiotalk: "World Microbiome Day"

Understanding microbiota through science, society, and participation

This special edition of Microbiotalk, held for World Microbiome Day, highlights new insights from the 2025 International Microbiota Observatory, showcases the citizen science project "Le French Gut", and gives voice to patients and public conversations shaping our collective understanding of the microbiota.

The gut microbiota The vaginal microbiota

While microbiota science continues to expand, its perception and role in society are still evolving. This Microbiotalk, hosted by the Biocodex Microbiota Institute for World Microbiome Day, brings together scientific data, citizen engagement, and the voices of patients to explore how the microbiota is shaping, and being shaped, by our daily lives.

Featuring experts such as:

Etienne Mercier (Ipsos)Microbiota under the microscope: Trends in France & abroad”, Prof. Joël Doré (INRAE)Mapping the microbiota of the French population: First results from Le French Gut”, Patricia Renoul (APSII)Microbiota and chronic disease: A message of hope for patients”, Dr. Julien Scanzi (CHU Clermont-Ferrand)Microbiota on social media: Connected doctors, empowered health

By bridging science, society, and citizen involvement, this event sheds new light on the way microbiota research is moving from the lab to everyday life and how everyone has a role to play in advancing this field.

Etienne Mercier

Microbiota under the microscope: Decoding trends in France and abroad

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"Above all, you will discover how culturally and depending on the country where one lives, one has a relationship with the microbiota, knowledge and behaviors that are extremely different."

Etienne Mercier's biography

30 years of experience in opinion and health surveys at Ipsos Public Affairs - France
An expert in opinion and health issues, this dual role gives him a comprehensive overview of societal issues (environment, gender equality, public policy evaluation) and health issues, enabling him to anchor the data obtained in the heart of a complex reality.

 

He has been leading the International Microbiota Observatory since its creation.

Etienne Mercier's speech

So, I don't have much time to present an investigation that I could talk about for hours, so I'll have to summarize my points.
Just to introduce you to this device which has existed for 3 years now and which is an exciting device because it is implemented worldwide.


We interviewed people in America, North America, United States, South America, Brazil, Mexico, we have people in Northern Europe with Finland, we have Eastern Europe with Poland, we have Asia with China and Vietnam.
We have a panorama like this of countries and people we interview which gives us a very rich wealth of data collected and which shows us above all that knowledge about the microbiota, the attraction also for everything related to behavior and the desire to change one's behavior to do good varies from one country to another.
As you can see, every year we've welcomed new countries; it's a tool that has evolved year after year. Last year it was Poland, Finland, and Vietnam; this year it's Germany and Italy who are the new members—welcome to them.
We will see that it is also interesting to have included Germany in this survey because Germany is rather a poor performer when it comes to the microbiota, but we will come back to that.


As is typical of Le French Gut, we've changed our approach. We usually present a global overview, but this year it's France versus the rest of the world. We'll try to compare ourselves, see how we compare, and how we stand compared to others on this topic.


The first topic is of course knowledge and knowledge of the terms of the microbiota, how are we French? We are not bad, there are 88% of French people today who have already heard of the term microbiota, compared to the rest of the world which is at 71% it is much better.
We are slightly behind Asian countries, which have a much stronger culture of understanding and behavior regarding what to do to maintain a healthy gut microbiome. Vietnamese people, for example, have a 94% knowledge rate.
Looking at the details, it's good, but we could do much better because, as you can see, only a third of French people currently know precisely what the microbiota is. The good news, as you can see, is that this knowledge is evolving; it's progressing year after year. In 2023, it was 81%, in 2024, 85%, and this year, 88%, and the proportion of people who are well-informed about the microbiota is also increasing.


So this is good news that we should be pleased with. So what do we know about the microbiota? Well, that's one of our specific areas of expertise. For us, the microbiota is primarily the gut microbiota—you see, we know it much better than others—and the vaginal microbiota.
Here too we are better than the others, you can see there are really big differences compared to the rest of the world. Regarding the skin microbiota we are roughly the same, where we are really less good is with the lung microbiota, the ENT pulmonary microbiota and the urinary microbiota, which we know a little less well.
It may seem like a minor detail, but today you have countries, again in Asia, and a little more so in Brazil, where these other types of microbiota are better known and perhaps there are strange correlations, but these are also the countries where we have the best behaviors regarding the microbiota.


Regarding knowledge now, where do we stand today? Well, first of all, yes, we can see it in the title, we are a little behind the rest of the world, but knowledge is progressing and it is rather good, we should be satisfied with that.
How did we measure the knowledge of the French? We simply gave them a quiz and that's when they tell us it's true, it's false or I don't really know the right answer.
You can see that there are quite a few topics on which today a large part of our fellow citizens know things about the microbiota.
Our diet, for example, has significant consequences on the balance of our microbiota. 80% of French people say yes, it's true, they know it.
An imbalance in the microbiota can have some important consequences on health, 78% know this.


You see, there are many issues today where you have the green answer, on which our fellow citizens have the right answer, and that is something we should be satisfied with.
So we are making progress compared to 2023, this knowledge has not progressed much this year but we are on knowledge which is now progressing.
And this is where I'd like to make a brief digression. Once you have people who begin to know and understand the role of the microbiota...

And how important it is, I think there is something being put in place to ensure there is much more prevention and that the French do much more. The only downside is that today, as you can see, we are a little behind the rest of the world in our knowledge of the microbiota.
Not on the fact that it could have important consequences but rather on everything you see at the bottom of the ranking which is in yellow, that is to say on the fact that I am looking into it a little bit.


Your microbiota is located in the gut, you can see it, we're a little better at that, but many diseases like irritable bowel syndrome can be due to an imbalance of the microbiota.
This is less well known in France. The fact that the microbiota allows the gut to deliver essential information to the brain is also somewhat less known in France.
So there is some information that is a little less known and as a result we have an overall score of 5.6 out of 9 while the rest of the world is 5.9, it's a little better.
And that's the problem in France today, and that's our specialty. We have good knowledge of the terminology of the microbiota, we have good knowledge of what needs to be done and of the role and importance of the microbiota, but this is not translated into action.
And that's a real issue. And when you look at today, when we ask the French if they have changed their behavior to protect and better balance their microbiota, today only 45% of the French tell us that this is the case, compared to 56% in the rest of the world.

So there is a problem, we have the knowledge, we know how important it is and yet we do not change our behavior and we will come back to this subject a little later. What worries me about these results is what we see regarding older people. Among older French people, only 44% have changed their behavior to achieve a better balance of their gut microbiota.


But we are at ages, at these ages, where you start to develop chronic diseases, real health problems, and yet, even today, the oldest French people do not modify or modify their behavior less than others to allow for a better balance of the microbiota.

When asked, "What have you done to better balance your microbiota?"
So, there are things that are progressing in France today and that are quite good. Having a varied and balanced diet at 84% puts us at the level of the rest of the world. Not smoking tobacco makes you even better than others, you smoke less. To shower at least twice a day, which was the wrong answer, the correct answer was of course no, we did not shower more than twice a day.

More of us are doing it.
So, is it due to hygiene problems?

People always say that the French are less clean than others.
I don't know.

Or is it because these are lessons that have now entered the minds of the French?
Nevertheless, they exhibit these good behaviors.


On the other hand, when it comes to the practice of physical activity, the consumption of probiotics or prebiotics, you can see, we are out of step on these subjects.

We're a little bit less good, you can see that. Our overall score is 4.3 out of 7. When I brought home a 4.3 out of 7, it was quite a celebration.

But we are less good, as you can see, than the rest of the world on these subjects. And in fact, the real problem is the level of information the French have today to finally take the plunge, take the leap and succeed in treating their microbiomes better than they do today.

And there is a lack of awareness on the part of healthcare professionals. And that's a real shame. Because today, when you ask the French, "Who do you trust most today to inform you about the microbiota?" Healthcare professionals are the first to go out at 96%, more than in the rest of the world and still increasing compared to last year. And it's much more than teachers, family, journalists, or sports coaches.

Healthcare professionals have an extremely important role to play on this issue because they have the trust of the French people.

And when we look at what they are actually doing, we realize that somewhere our healthcare professionals are not meeting expectations on this issue. When French people are asked, "Has a healthcare professional ever made you aware of the importance of preserving the balance of your microbiota as much as possible?"

37% in France versus 46% worldwide. "Do you explain the best practices to adopt to maintain a healthy balance in your gut microbiota?" 35% compared to 38% worldwide.

On all these items, on everything related to explanation and raising awareness about prevention and what needs to be done to achieve a good balance in this microbiota, we are falling short. And that's a real shame because the French are ready. They know how important it is today to have a balanced microbiota, and yet this information isn't being provided to them. And where we see it is with antibiotics.

I showed you a figure earlier when I told you that 67% of French people know that antibiotics have a negative impact on their microbiota. And yet, when asked, "The last time you saw a healthcare professional who prescribed antibiotics, did they do the following things?"

"Are you mentioning any digestive issues that may arise from taking antibiotics?" Yes, at 45%. That's the best figure. On the other hand, giving you advice to limit as much as possible the negative consequences of taking antibiotics on your microbiota, only 31%.

And to tell you that taking antibiotics can have negative consequences on the balance of your microbiota, only 29%. There's a problem there. There's a problem. The French know, and yet, healthcare professionals are not providing them with the information they need.

So it is this gap now that health professionals must help us with, I would say, to get through this and push the French to do better, to do more on this. Regarding the microbiota test, since "French gut oblige", we still went to ask them about the possibility of testing their microbiota.

So, regarding the possibility of testing their microbiota, the French don't know much about it. 18% have already heard of it. We are much less well-known than the rest of the world, at 27%. So, there is still a lot of communication and a lot of explanation to be given to the French so that they know what is going on.


However, when asked "Would you be interested in testing your microbiota?", well, 47% of them say "Yes, why not". So, it's based on self-reporting. Of course, it's something that... We know we won't get 47%.
If 47% of French people agreed to have their microbiota tested, that would be something exceptional. As you can see, this means that today, regarding these tests, regarding the possibility of knowing exactly what is happening with the microbiota, there are many French people who are in favor.

So, what are you in favor of testing?


Ultimately, they should first test the microbiomes they know best, since our specific expertise lies in knowing much more about the intestinal microbiota and the vaginal microbiota. This does not mean that they are against testing other microbiomes, but they know less about them. So, they come out, you see, at much lower levels.

And besides, why test your microbiota? Here again, the French are quite honest

When you want to test your microbiota, it is first, in quotes, in a somewhat selfish way, that is to say, to carry out a complete health assessment.

Firstly, 64% of them say it, if I'm not mistaken, to prevent and slow down the onset of pathologies. So it's something that helps them take preventative measures for their own health. Here again, you can see that we are much higher than in the rest of the world. And then, I'll go straight to the second-to-last figure, it could also be, even if it comes out lower, to support research and development of new microbiota-based therapies at 28%.


And that's the figure that's interesting and shows the true potential of the tests and the French Gut.

The fact is that today, 28% of French people say, "I, yes, would be willing to do analyses to advance French research on this subject." And finally, when we get to the heart of the matter, that is, the donation of salt you were just talking about, 46% of French people tell us that they would be willing to do it. We are still below and far behind the rest of the world. The rest of the world represents 59%. One small detail, because we are also working on this subject, we have the same concern for colorectal cancer screening.
It's all about poop, really. And the French have a much harder time with this subject than other populations.

You can see it in that figure. We have problems. That's what could be said very quickly about this survey. I encourage you to look at the overall results. They are extremely informative. Above all, you will discover how culturally and depending on the country where one lives, one has a relationship with the microbiota, knowledge and behaviors that are extremely different.

Thank you so much.
 

3 key messages

  • High awareness, but limited action in France: 88% of French people have heard of the term microbiota, ahead of the international average (71%). However, only 45% have taken concrete action to improve or protect their microbiota, compared to 56% worldwide. There is a clear gap between knowledge and behavior, especially among older adults in France.
     
  • Healthcare professionals are trusted… but underused: 96% of French respondents trust healthcare professionals to inform them about the microbiota — a higher rate than in other countries. Yet, only 37% recall a health professional raising awareness about microbiota balance, and just 31% received advice to minimize the impact of antibiotics on their microbiota. This shows a missed opportunity for prevention and education.
     
  • Strong potential for citizen science engagement: Although only 18% of French people are aware that microbiota testing exists, 47% say they would be interested in doing it. 28% would be willing to participate in microbiota testing to support scientific research, highlighting a positive attitude toward initiatives like Le French Gut. The main motivation remains personal health monitoring, but collective interest is emerging.

2025 results: The International Microbiota Observatory (France only?)

Discover the survey

Prof. Joël Doré, Phd

Mapping the microbiota of the French population: first results from "le French Gut"

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"Today, at the global level, it is an epidemic of chronic diseases with an uncontrolled increase for the past 70 years, diseases that affect the cardiovascular system, cardiometabolism, overall, obesity, diabetes, but also the inflammatory, joint or intestinal diseases..."

Prof. Joël Doré's biography

Joël Doré is an internationally renowned French microbiologist, recognized for his pioneering work on the human gut microbiota. He is a research director at INRAE and scientific director of MetaGenoPolis. 
For more than 40 years, he has devoted his research to the interactions between gut microorganisms and their human hosts. He is one of the first researchers to have highlighted the importance of microbiota in the prevention and development of chronic diseases (IBD, obesity, and diabetes).
He also works to disseminate science to the general public and health professionals, notably through the Le French Gut project, which he co-leads.
A prolific author and lecturer, he advocates a holistic and preventive approach to health, in which diet and the quality of the microbiota are key factors.

Prof. Joël Doré's speech

I'm going to start by talking about the situation we're experiencing. Today, at the global level, it is an epidemic of chronic diseases with an uncontrolled increase for the past 70 years, diseases that affect the cardiovascular system, cardiometabolism, overall, obesity, diabetes, but also the inflammatory, joint or intestinal diseases, liver diseases and then diseases that concern plus the nervous system, neurodegenerative or neuropsychiatric, for example.

And that's 41 million deaths in 2019.

74% of deaths are linked to a chronic disease. That's one in four people by 2025, today, affected by at least one of these conditions and often, we have multiple health conditions, cumulative chronic diseases. One in two people in the Organization's predictions The global health situation will be one of obesity by 2035.

So, we can see that things are really evolving in a way. Quite impressive, and not in a good way.
What does that mean?

That means we haven't understood what we're dealing with. We are dealing with a microbial human, we are dealing with a symbiosis and this is not yet taken into account in our behaviors that have been mentioned, but also in the medical practice today. We were able to characterize the microbiota, we were able to test the microbiota in a somewhat generic sense of the term and characterize the variations or variabilities of the microbiota in different contexts.

On the left, here, we have this image of a differentiation of the microbiomes of people living in the environment industrialized or non-industrialized environment. And then, in the middle, what we're representing here is this story tells us that the microbiota matters, the microbiota plays a role in a large number of pathologies for in which an alteration of the microbiota has been documented compared to individuals who remained healthy. And these are quite numerous diseases, which ultimately concern the major pathologies of modern society, which are increasing in incidence, as we have seen. But it also concerns human parameters and including intestinal permeability, inflammation, oxidative stress, which ages our cells a little faster than we would like, in fact, and which can also further alter the gut microbiota.

We can see how this situation can become somewhat of a vicious cycle to establish itself in the form of a vicious circle. And that's what we're documenting today in chronic diseases. Perhaps it relates to this idea that we don't have everything to has clearly understood what we have to do when we addressed to the microbial human. So, when we zoom in a little on the current perception of this which relates to testing of the gut microbiota,

There's a kind of growing sense of anger. A little, and which translates into opinion pieces in newspapers or then in the scientific literature. These are comments from colleagues in North America, here they tell us about DTC, direct to the consumer characterization of the microbiota at the request of Mr. Average Citizen really needs to be a little better regulated than it is today. And so, this may be a topic of our discussions. But we're starting from that basis.


Today, there are many small companies that offer microbiota analysis, sometimes requiring a few hundreds of euros and which will provide a report of one forty pages with beautiful images that tell you how you look when we take a selfie from inside. This is problematic because these people will see their doctor with a good relationship that medicine cannot manage today. And we would indeed like to achieve this virtuous circle which would allow doctors to prescribe the analysis of microbiota along with biology analyses classic blood or urine test through medical biology laboratories which are the natural interface in this diagram, this circuit.

For what ?


Finally, to integrate this microbiota data into medical practice. This is to diagnose alterations in the microbiota and of symbiosis. This is to monitor the evolution of the symbiosis along the path of the patient, particularly during treatment. And then, it's to integrate microbiota data and the symbiosis data in the nutritional recommendation, for example, or in medical care. In order for this virtuous circle to be established,

What do we need?

 

We need standards. I'm going to explain to you that we already have them. You need large numbers and, of course, Le French gut plays a role in this scheme by contributing large numbers to build the reference. And then, it will be necessary to demonstrate it with evidence, with proof scientific that there is a clinical benefit, a benefit to the intake. If indeed the doctor is trained in the gut microbiota. Patient education and training will also be necessary for healthcare professionals. In reality, we quite often see today that patient education is almost entirely happening online, a little faster than the adaptation of the training of healthcare professionals with scientific knowledge who It itself is evolving very quickly.


As I was saying, we have the standards. As far as we are concerned, we published the standards in 2017 which allow for the analysis of the intestinal microbiota in a completely standardized, so much so that if it were done from the same applies in the United States, Europe, and Australia. For example, we will get the same result.

This is what is truly necessary for a clinical application. And then, we also saw the appearance of equipment from reference that allows us to calibrate the processes we put into work to perform this analysis. And we have scientific colleagues in the United States or in England, for example, who offer us tools that they are going in that direction. That aspect is settled.


What remains to be provided for this scheme, it's the large number and the French microbiota, Le French gut aims to accelerate research on the microbiota and therefore to provide this additional information. This is a project of public interest aimed at improving prevention to screen, diagnose and treat diseases chronicles tomorrow. And the goal we have set for ourselves is by 2029, to collect and characterize those of 100,000 volunteers in France, adults, French residents and also healthy people versus sick people.

For what ?

To define the reference, the standards of the microbiota, the ranges of variation of the classical parameters, usual and dominant of the intestinal microbiota in the healthy individual and better understand his alteration in the disease. It's also about laying the groundwork for real development nutritional recommendations, possibly preventive and personalized to pave the way for new therapies, particularly in the context of chronic diseases, and also to raise awareness among the general public, adults and children who are or will be monitors their health tomorrow. This is a project led by INRAE, which is carried out in very close collaboration with the assistance public and Paris hospitals, at PHP, and which brings together public and private partners, public institutions such as Agro ParisTech, Inserm, and the CEA, the Pasteur Institute and INRIA and private companies including Biocodex, since the start, as has been mentioned, for the pharmaceutical sector, but also partners who cover more the nutrition aspect or the ingredientists and GMT for microbiota analysis intestinal for medicine.


This is a project that is supported by many partners communication. I'd like to say, you can all actually be like that, But we have ambassadors, including Michel Cymes, including Marine Lorphelin, Jimmy Mohamed and Julien Scanzi, who will speak after me, and who communicate with millions of people via the Internet, in particular.

How do we proceed?


We've been working on this for years, I'd say, to simplify the volunteer's journey as much as possible. And so, you will have to, as a volunteer, register on the Internet and create a personal page. And then, of course, you'll have to check that you are eligible. Eligibility is based on a few criteria. To be over 18 years old today, not to be under guardianship or under guardianship, reside in metropolitan France and not having taken antibiotics or undergone a colonoscopy in the three months preceding the donation. Finally, if you receive your collection kit and that you have an antibiotic to take for a reason.

If you're not feeling well, come back and see us in three months and everything will be fine. There is no problem. And the process is, I register, I sign a consent form. This is a classic example of ethics in cohort studies. An informed consent that will tell you that you participate in the study. And then also a second consent that will tell us if you agree to be contacted again in the future to explore the relationship between food, health and microbiomes through additional questionnaires, for example, or else you propose to participate in specific studies on complex questions in the science of microbiomes. You fill out a few questionnaires, the mandatory basic questionnaire is completed in approximately one about fifty questions, so it's 15-20 minutes.

However, you also have optional questionnaires that you can fill out this form, which will tell us more about you, eating habits, lifestyle habits or regarding your health. The kit shown here in the upper right corner is a kit which is somewhat similar for those concerned by the screening for the risk of colorectal cancer. In fact, we simplified it as much as possible. You place a saddle on a small paper hammock in the toilet and you have a cotton swab or the equivalent to place it in the saddle and then you place this piece of cotton stem in a tube that completely stabilizes your sample for one week and which is sent by mail. That's really minimized in terms of impact.


Nevertheless, there are people who find it difficult to make this gesture. There, and we understand it. Become one of our volunteers, become part of from our communications team. I'll talk about it later.

Where are we today?

We have a little over 25,000 participants who have indeed, they came to us as volunteers. That's a quarter of our goal. So, we will continue to work, continue to communicate and continue to include new volunteers. In terms of age, it's mostly people middle-aged, between 40 and 60. That's where we have the most people.

We have a little less than we would like to have for elderly or very elderly people. A little less than we would like to have for young adults. It's 70% women. So, gentlemen, to your tablets or your toilets. And then, it's a nationwide distribution that matches impressively with demographicsof the French population. So, we are very happy to be able to actually have an inclusion of volunteers throughout the country. Slightly less in the North, slightly less in Corsica.Obviously, I want to say, but despite everything, we have a very good representation.

And then, a third of our volunteers are... patients who consult for a pathology, mainly respiratory or cardiometabolic diseases. In fact, hypertension, for example, comes next digestive diseases. Obviously, then there are systemic diseases or autoimmune. And then, finally, neurological diseases. The nervous system is involved.

So, I can't see the figures because it's a bit far from it for me, but we have a little over 80% of people who have never smoked among our volunteers. Around 80% of people are omnivores. Of course, we are also interested in eating habits. And then, we have a high proportion of people who, declare that they have regular physical activity considering that it's at least 30 minutes a day dynamic walking.

There you go, and you can all communicate. Ideally, you should contact frenchgut-press at inrae.fr to have the tools available communication that is entrusted to you, which may be, for example, a poster to print and put in your pharmacy or your supermarket. And then, possibly, kits too, flyers to distribute it around you. Get people in the family involved as well. This is important to us.

3 key messages

  • Chronic disease is rising — and the microbiota is a missing piece: The world is facing a global epidemic of chronic diseases, responsible for 74% of deaths in 2019. Despite advances in healthcare, we have not fully integrated the microbiota into medical thinking or public behavior. The gut microbiota plays a documented role in many chronic conditions (e.g.,  cardiometabolic, inflammatory, neurodegenerative), yet this "microbial human" dimension is still overlooked in medical practice.
  • From consumer tests to clinical integration: a paradigm shift is needed: The rise of direct-to-consumer (DTC) microbiota tests is causing confusion; patients arrive with results that healthcare professionals aren’t prepared to interpret. The goal is to build a virtuous medical model where microbiota data is analyzed in standardized, clinically valid conditions, integrated alongside routine lab tests.

  • Le French Gut: building a national reference for prevention and innovation: The French Gut project, led by INRAE with public and private partners (including Biocodex), aims to collect microbiota data from 100,000 volunteers by 2029. With 25,000+ participants already included, the project will help define microbiota reference ranges, support nutritional recommendations, and enable new therapeutic strategies.

Patricia Renoul

Microbiota and chronic diseases: A message of hope for patients

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"First and foremost, it's about helping and supporting those who are suffering to allow them to break out of their isolation."

Patricia Renoul's biography

Patricia Renoul has been president of the APSSII (Association of Patients Suffering from Irritable Bowel Syndrome) since 2022, having been a volunteer since 2019 and then a member of the Board of Directors. 

The APSSII was created in 2010 by two professors of gastroenterology, Professor Sabaté (AP-HP) and Professor Piche (CHU Nice). The APSSII is a non-profit organization approved by the Ministry of Health.

Patricia Renoul's speech

The Association of Patients Suffering from Irritable Bowel Syndrome  (APSII) is a national non-profit organization. 1 1901 and which has ramifications throughout the territory, across all our regions. Since the end of 2024, we have received accreditation from the Ministry of Health, which gives us the opportunity to represent all patients in hospital settings, whether they are private or public or within the institutions national.

For our association, this is indeed a big step and recognition. This also obliges us, since some of our members, in order to confirm our approval, they must participate to the representation of users in these bodies. So, that's still a big step forward for our association which, as Elodie reminded us, she is 15 years old today. So, the association was born from an observation that had been posed by the two professors mentioned above, Professor Sabaté and Professor Piche, that the disease, that is to say, bowel syndrome deserving, suffered from low regard by the entire population, including of course the healthcare professionals.

Hence the creation of APSII in 2010. So, these missions are the missions of an association of patients and which also echo the values of the APSII. First and foremost, it's about helping and supporting those who are suffering to allow them to break out of their isolation. You will see that, as some of you may already know
For you, this disease is not fatal, but it is a disease which affects daily life and sometimes for years and years. The second or second objective, the main objective of The association's purpose is to support research, to promote it and support her. And you will see that we are now very involved in Le French Gut, and it's for the association, by the way, a first significant financial support from so with Le French Gut.


The third mission, the third objective is to inform and to inform aboutreliable way. And then, the fourth objective is to defend rights of the suffering. So, behind the defense of the rights of the suffering, there is all the support that we have put in place for children and teenagers. Support for caregivers, that is to say relatives of patients, and also support for all people who wish to benefit from a recognition as disabled workers.

So, I'll go back to a basic point and the definition of irritable bowel syndrome. That's the scientific definition. The diagnosis of the IBS is made on the basis of the Rome criteria. It was a group of scientists who met in Rome, and which laid down a number of conditions in 2016, criteria. And so, IBS is defined as pain recurrent abdominal pain. So, it's primarily a pain that occurs at least one day per week in the last three months, with at least two of the following criteria. In relation to defication before, after, associated with a changes in stool frequency and associated with a change in appearance, in look,
of the appearance of the stools. So, to put it simply, irritable bowel syndrome, It's a pain, it's an abdominal pain and adisorder, a transit disorder to which we can add all a whole host of, let's say, effects, a few effects secondary symptoms include bloating and gas pain, perianal pain, back pain.

And I'll spare you the details because in the testimonies, obviously, we are collecting more and more from our members of side effects, in any case of the disease. So, I added a short sentence, a definition said to be evolving. We are now talking, then, still about the syndrome of Irritable bowel syndrome, not irritable colon syndrome since it's the intestine, it's also the intestine small intestine and colon. And today we're talking about the gut-brain interaction. which, obviously, reflects the entire connection that is occurs between the gut and the brain and vice versa. So, here are some figures regarding IBS, I'm going to speak in acronyms. 5 to 10% of the French population is affected which is not what is not less. So, obviously, with levels of gradation different, we have among our members people who suffer from irritable bowel syndrome in a moderate and others who really need to stop their professional activity.

Two-thirds of people affected by the syndrome Irritable bowel syndrome affects women. Once again, there you have it, as Etienne reminded us earlier, women, yes, were affected undoubtedly many more, more concerned, and dare more go to healthcare professionals to declare their illness. This is the primary reason for seeking medical advice in gastroenterology. So, this figure, obviously, this statistic talks a lot.


And then, to also talk about food, and I'll will return, 73% of sufferers believe that diet triggers their symptoms. So, those suffering from the syndrome of Irritable bowel syndrome, as you've understood, is also known as IBS.
a chronic condition, since that is the very definition of Irritable bowel syndrome, which is considered chronic, Obviously, this goes hand in hand with his career's difficulties, of daily difficulties.

Again, it's not a fatal disease, but it is a disease that is often debilitating. When people have 10 or 15 bowel movements a day. Yes, yes, it's disabling. Yes, one cannot lead a professional life, a social life, a family life, a normal family life. And yet, it is a pathology that is misunderstood, misunderstood and very trivialized. How often do we hear about the suffering around us?

They told us, "There you go, I went to see a professional."

"It's about health," he replied, "but it's all in your head."

And besides, everyone has a stomachache anyway. No, no, there you go. And it is a pathology with multifactorial causes. So, multifactorial causes that can be the source difficulties arise because we don't really know that there are there's no single cause, obviously. However, we have identified causes today but there is still research into the causes of Irritable bowel syndrome.

Among the causes identified today, visceral hypersensitivity, modification of the anomaly in the control messages to the brain or of the spinous monk. An intestinal infection, problems with intestinal motility, disturbances as well in the context of visceral hypersensitivity. And obviously, a major cause has been identified. Today, the imbalance of the microbiota. And that, obviously, is a cause we hope for that Le French Gut project will be able to work on, and especially with us.

So, this is a source of difficulties. Obviously, this diagnosis is a bit complicated, but it is also a source of what is a source of complexity. That's the therapeutic response. Because the causes are multifactorial, therapeutic responses are associated with them also multidisciplinary, varied. So, the patients are treated with medication, are
also treated by a non-drug approach. They are also advised to engage in physical activity. But what's complicated, in my opinion, is that the patients, they try many things. So, obviously, there are things that work, but there are things that don't work. There are things that work for a while and then don't work anymore afterwards. So, there you have it, that's what healthcare professionals are telling us.
In any case, all doctors who receive IBS patients, they tell us that those suffering from IBS are patients, complicated patients.

So, it's always the suffering ones facing the IBS, IBS is a source of physical pain. You probably doubt it, since that's the very definition of Irritable bowel syndrome and psychological pain. When you're in pain every day, for hours, sometimes for weeks, for months, even for years. We have members who have been diagnosed at the age of 14 and who, today, they have 70.

As you can imagine, it's a life, excuse my language, but it's a life of hardship.

So, one cannot be in very good mental health as well when you've been suffering like that for a while for so many years. Therefore, consequently, a quality of life which is heavily impacted, as I was saying previously, professional life, emotional, social, and family life. It is the IBS and, above all, also a source of incomprehension in the eyes of others. What I was saying earlier, we can say that we can say yes, everyone has a stomachache. So, it's an invisible disease and one that really is misunderstood even sometimes by those close to them.
And then, it is a source of guilt because of a psychosomatic approach. Indeed, the disease. So, you have a stomachache, it's all in your head and then relax, do some tai chi and you'll feel better. So, today, I was telling you in particular that 73% of patients felt that diet triggered their symptoms. 93% of sufferers believe that diet worsens the symptoms. So, you see here, in fact, the major issue is the difficulty feeding oneself. So, there are answers, obviously, since that makes part in particular of the therapeutic response, that is to say
It may be possible to adapt, to adjust one's diet. But it's not that simple. We're talking about the poor regime due to FODMAPS, which isn't what is not easy to follow, for which we need of dietary support. We're talking about the Mediterranean diet, of the NICE regime.

But in any case, there is a real difficulty in feeding oneself and, consequently, a risk of develop eating disorders. When you follow a diet for six months and who is quite restrictive, it becomes really very complicated. And that has repercussions for what follows. So that's the research on the microbiota. Well, for us, for the patients, at least, it's a considerable hope. So, like all patients, obviously, we are very impatient and especially when faced with research and for us, research on the microbiota is a new therapeutic target related to diet and the microbiota imbalance. Therefore, dysbiosis is understood as a cause of Irritable bowel syndrome.

And so, for us, this is a path of research.

Obviously, major. That's it, and I'll end with this message, truly a great one a message of hope for us, since the Association of patients suffering from irritable bowel syndrome is in the process of concluding an agreement with both INRAE and the APHP within the framework of the French gut project.
So, this will translate into a targeted mobilization on the irritable bowel syndrome, irritable bowel syndrome. The project involves collecting salts from patients suffering of irritable bowel syndrome, to analyze them and obviously to search for appropriate therapeutic approaches and suitable therapeutic approaches that would be appropriate for us, Obviously, there is hope, a significant hope. As you have seen, the answers are, the answers therapeutic approaches are multidisciplinary, are complex, sometimes complicated. So, if we had an identified cause and an answer therapeutic, that would be for us, obviously, a different way of life.
 

3 key messages

 

  • IBS is a chronic, invisible, and misunderstood disease — with very real impacts: IBS affects 5–10% of the French population, predominantly women (2/3 of cases), and deeply impacts daily life, including social, professional, and emotional well-being. Despite being non-lethal, the condition is often trivialized and misunderstood — even by healthcare professionals. Many patients report being told "it’s all in your head." The disease is multifactorial in origin (visceral hypersensitivity, gut-brain axis dysfunction, microbiota imbalance…) and leads to complex and variable therapeutic responses.
  • The microbiota is a source of hope for patients: For patients, research on the gut microbiota represents a major therapeutic hope. Dysbiosis (microbiota imbalance) is now recognized as one of the main contributing factors to IBS. The association is actively involved in the French Gut project, contributing to scientific research and data collection to better understand IBS mechanisms and support future treatments. An agreement with INRAE and AP-HP will enable targeted stool sampling from IBS patients to fuel microbiota studies and identify personalized therapeutic pathways.

  • The patient association plays a key role — support, representation, and advocacy: Since 2024, the association has been officially recognized by the Ministry of Health, granting it the ability to represent patients in healthcare institutions.
    Its missions include: Supporting patients to break isolation - Promoting research - Providing reliable information -Defending patient rights, including access to disability recognition and supporting caregivers
    It also raises awareness about the dietary burden of IBS: 73% of patients say food triggers symptoms - 93% believe diet worsens their condition - Restrictive diets are hard to maintain and can lead to eating disorders, showing the need for personalized support

Dr. Julien Scanzi, M.D.

Microbiota on social media: connected doctors, empowered health?

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"So we can all say whatever we want on social media. The doctors a little less so, and especially since the arrival of a charter in 2025 which was expected."

Dr. Julien Scanzi's biography

Gastroenterologist at Thiers Hospital and Clermont-Ferrand University Hospital, author and lecturer, health influencer on the topic of gut microbiota

Dr. Julien Scanzi's speech

I'm not going to talk to you about the microbiota, which I do very often, no, not Irritable bowel syndrome, which I also get often, but my activity is a little more about being a health influencer as mentioned. So, I'm going to explain a little bit about how it all started with a fecal transplantation and that's why I'm here right now

Now, let me talk to you.

So, I am indeed a gastroenterologist in Auvergne at the Thiel hospital at the Pierre-Montferrand University Hospital. I have a relatively general gastroenterology practice. I'm not stunned by the treatment, now by the microbiota and also through the transmission of knowledge to colleagues and then to the widest possible audience. So, I'm going to explain how I am doing in general activity. to now be on social media followed by a few thousand people. So, you probably already know this, but you may have heard to talk about fecal transplantation. Something has revolutionized this therapy, it was the publication in 2013 of a very large Dutch study that... demonstrated the effectiveness of fecal microbiota transplantation, the act of treating a patient through the microbiota, and therefore of a subject healthy. And so, this study, which was published in two parts, has perfectly demonstrated the effectiveness of this procedure for recurrent infection at a bacteria called Clostridioides difficile. I was fortunate, in fact, from the moment this study was published, to have a patient who was suffering from that and therefore, to be able to help her to propose this treatment. And this patient, who was very close to dying,
This was her sixth hospitalization because of this infection and she was in a deplorable state of health.

And we tried that procedure, which wasn't done at the time, she was still in France and she recovered very quickly. And I thought to myself, what we just did is incredible. A patient was probably saved by transferring her microbiota.
from someone else. The power of this microbiota is incredible. And so, afterwards, I continued to take a little interest in it. I was fortunate enough to be part of an expert committee of the NSM to draft and structure a protocol for the implementation of this procedure. And then, very quickly, the French group was formed fecal transplantation under the impetus of Harry Sokol, that you most likely know. Recommendations have been established for this fecal transplant in healthcare. But beyond the fecal transplant itself, it's really the microbiota and its impact on our health which really really interested. And so, yes, it marked a turning point in my career. Because in those years, I was thinking more about orienting myself towards digestive endoscopy and not really in the care of the microbiota in itself. And it is this curiosity surrounding the microbiota that has made a moment where knowledge was becoming exponential.

Every day, there were new studies that showed the role of the gut microbiota in our health. I was fortunate to have access to this knowledge as a doctor, as a scientist, as a member from the French fecal transplantation group. And I thought to myself, this knowledge, it concerns everyone's health. We are all microbial and to take care of our health, as a human being, we must also take care of our health microbial. I talk about it very often.
And in fact, I felt concerned by that. I thought to myself, these acquaintances that I was fortunate enough to have Having acquired them, I need to share them. And then, COVID-19 really marked a bit of a turning point for many things. And really, for patients, probably the desire to be even more proactive in one's health. There was also access, enormous access to information and disinformation.

And for me, as a caregiver, I identified more with the idea of holistic medicine, integrative medicine and a sensitive medicine. And so, the micro-onester certainly has its place in all of this. So, how can we raise awareness among everyone? I thought to myself, there are people around me who are working on science theses, who work in laboratories, who write hundreds of scientific pages. And besides, it wasn't really my thing. I thought to myself, rather than... I'm turning to the general public, and so I'm going to try to write a book for the general public on the science of the micro-earth. I wasn't ready to do it at all. I'm not the last one either. I think one of the last ones is probably in the room. Patrick Vega, who wrote a great novel with a plot revolving around of the intestinal micro-one, so the arm sees it anyway. And so, I, being neither the first nor the last, I still wanted to contribute and write, so... this book which brought together a little bit of all the knowledge I had crises of recent years and that I wanted to put to good use of the general public.

So, it was a bit of a struggle to find a publisher, not at all in the field, but I still managed to do it with certain fortunate circumstances, to write this book, to publish it and then, in fact, to write a book wherever we want It's pointless to transmit a lot of knowledge if no one reads it. It's of little interest, and so I engaged in a battle to try and make this book known. And so, I don't have a show on the radio or on TV, I'm not very familiar with newspapers, but we're fortunate at the moment, Having everyone have access to social networks gives everyone a voice. And so, I've taken ownership of this means of communication a little bit. First, to get my book. And then, in  fact, I very quickly realized that more that it was a lever to promote my book, it was really a channel of communication in its own right, and even if most people those who followed me on social media didn't buy my book. It's not a big deal as long as they had access to the same knowledge that I could share with them through posts, whether it be videos, carousels, etc. And so, it allowed me to gradually raise awareness among an audience increasingly broad in scope, ultimately, though, to encourage behavioral changes, since Joel insisted that we are victims, the world as a whole, from an epidemic of chronic diseases and that most of these chronic diseases have a very important link with our environment, but also our way of life.

Environment and lifestyle have a very significant impact about our microbiota, and the microbiota is probably one of our health and we're going to have to take back a little bit all this knowledge to try and bring back a little bit of gold in all of this, and try to reduce these chronic diseases a little bit and to improve our health, prevention, etc. I first went on LinkedIn, then on Instagram. I suggested 2 to 3... So it's quite a bit of work, and then there were things to learn something you don't learn when you're a doctor, like writing posts about it.

Please write to me in a way that is appropriate for a general, non-medical audience, non-scientific, to amplify, to popularize without distorting which is something quite complicated. And then try to learn a little about algorithms, because social media also consists of algorithms and then there are new tools, whether it's Canva, Magic, for subtitles, CapCut for shooting videos, etc. So it's really a second job in its own right, that I have learned in recent years. And so, this will give us a whole transformation around the microbiota, around intestinal health, around our lifestyle to try to promote behavioral changes that benefit everyone and also to promote... So I could have included it, that's true, also projects like Le French Gut, I was lucky enough to do it. I was able to take advantage of my exposure on social media to also talk, and I do it from time to time, of this citizen science project which is everyone.

So we can all say whatever we want on social media.

So the doctors a little less so, and especially since the arrival of a charter in 2025 which was expected. We are probably the only category of people who on social networks are subject to a charter where basically you can't just say anything without potentially having problems, and that's perfectly normal. Unfortunately, this charter does not apply to a whole host of others who can, who have total freedom to say anything and everything. So it's really something complex. Social networks and access to information for all and then there's the fact that everyone can express themselves on these networks. It's both something wonderful and at the same time something potentially dangerous when you don't know how to sort the information.

So, what was my assessment?

I am already fortunate to have a community that has grown considerably, these past few years, and which now gives me a certain legitimacy to continue talking about all of this. I know that people are interested in being subscribed on social media. This shows that there is an interest in health and prevention.
and for intestinal microproblems and for intestinal health. So that's something really positive. It also gives me the opportunity, beyond simply talking about the intestinal microproblem, but to talk more broadly about health and prevention, in particular to promote screening and prevention talking about screening and prevention of treatable cancer during Marseille Bleu, for example, to try to debunk some false beliefs, to raise awareness among the general public as much as possible and therefore to continue in this direction. And then, as we were saying, Étienne, one of the major issues, since the general public is starting to become familiar with the microphone, begins to take ownership of her health, begins to experience changes behavioral, but there are in reality who are healthcare professionals.

So I think that's probably where the real issue lies.

It's about improving the knowledge of healthcare professionals or, more broadly, on the impact of micro-activity on our health, because it is also up to them to be able to give preventative advice, also to raise awareness and take over a little bit of what I'm doing and that others are doing on social media. So there are of course other projects, a website and then training courses, really, because there is a real lack of training. I even think that currently, in medicine, 10 years of medical studies, not much at all. In my ten years of life, I never once heard the word microbiota. The word probiotic was used once, even though it wasn't that long ago. So there's a real delay at a time when we all have access to this information. via the Internet, via networks, via AI, etc.

3 key messages

  • From medical practice to digital communication: a shift driven by conviction: Dr. Scanzi began his journey with a transformative case of fecal microbiota transplantation, which saved a critically ill patient. This moment sparked his deep interest in the power of the microbiota and changed the trajectory of his career. Motivated by the lack of microbiota education in medical training and the increasing scientific evidence, he made it his mission to bridge the gap between medical knowledge and the general public. His path led him to become a doctor-influencer, using social media as a tool to inform, educate, and engage.
  • Social media as a tool for public health and scientific outreach: Initially used to promote his book on the microbiota, social media quickly became his primary channel for education. He emphasizes the responsibility of doctors online, especially under the new 2025 professional charter, and contrasts it with the unregulated space of health disinformation. Through videos, carousels, and posts, he aims to foster behavioral change, raise awareness about chronic disease prevention, and promote evidence-based health communication.
     
  • The urgent need to train healthcare professionals on the microbiota: Despite public interest, most healthcare professionals are underinformed on the microbiota: “In 10 years of medical school, I never heard the word microbiota.” Dr. Scanzi believes physicians must catch up to provide relevant advice, support prevention efforts, and regain their educational role. He advocates for training programs, awareness campaigns, and integration of the microbiota into routine care and screening, including participation in citizen science projects like Le French Gut, which he promotes via his platforms.

Decoding gut health trends on social media

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Celiac disease: the downside of going gluten-free

Eliminating gluten is essential for managing celiac disease. But what are the effects on gut microbiota and intestinal function of following a gluten-free diet for a full year? This British study offers insights. 1

Celiac disease Microbiota and celiac disease

A lifelong (sidenote: Gluten Gluten (from Latin glue): a viscous nitrogenous substance formed when flour is hydrated. It originates from specific proteins – glutenins and gliadins – found in cereals, primarily wheat. ) -free diet is mandatory after a diagnosis of (sidenote: Celiac disease A disease caused by a malfunction of the immune system, which mistakenly attacks normal components of the body – in this case, the small intestine. It is triggered by the ingestion of gluten in genetically predisposed individuals. ) . Yet its effects on intestinal function and gut microbiota remain poorly understood. Hence the relevance of this observational study, which assesses the intestinal function and microbiota of 36 celiac patients before and after one year on a gluten-free diet, compared with 36 healthy controls following a standard diet.

2 to 3 As with other autoimmune diseases, celiac disease is more common in women, who are affected 2 to 3 times more frequently than men. ²

Before gluten elimination

Newly diagnosed patients not having started a gluten-free diet differed from healthy volunteers in that they showed higher levels of somatization, depression, anxiety, gastrointestinal symptoms and a 5% decrease in stool water content. The researchers also observed:

  • a significantly higher water content in the small intestine (+57%), potentially due to a combination of impaired absorption (villus atrophy), increased secretion (crypt hyperplasia) and disrupted intestinal motility;
  • slower intestinal transit (+83%), possibly linked to mucosal lesions, inflammation affecting motility, malabsorption and imbalances in gut hormones.

Although the team did not identify a specific gut microbiota signature for celiac disease, it did find differences in certain bacterial taxa – some of which may relate to altered intestinal function. For example, the reduced abundance of Blautia could be linked to slower transit and larger volumes of material in the colon.

95%

Genetic predisposition plays a key role in celiac disease, which is strongly associated with specific human leukocyte antigen (HLA) genes. Most CD patients (approximately 95%) express genes encoding the major histocompatibility complex (MHC) class II protein HLA-DQ2. 3

20%

The autoimmune origin of celiac disease is confirmed by the presence of serum autoantibodies and the frequent association with other autoimmune disorders, observed in 20% of patients (e.g. dermatitis herpetiformis, thyroiditis, type 1 diabetes, primary biliary cholangitis). 4

A diet that influences the microbiota

After 12 months of gluten elimination, patients reported improved well-being (less somatization, reduced anxiety, slight improvement in transit, milder symptoms, etc.), but not to levels comparable with those of healthy controls. This suggests that while gluten avoidance is essential, it is not sufficient on its own.

One year on a gluten-free diet that eliminates wheat and its fibers (resistant starch and arabinoxylan) had a mostly negative impact on the microbiota and metabolic pathways: reduced abundance of Bifidobacteria and therefore the enzymes involved in breaking down starch and arabinoxylans; and increased presence of E. coli, Enterobacter and Peptostreptococcus, leading to an increase in the associated proteolytic activity.

Imbalances persisted despite good adherence to the diet, confirmed in most patients by normalized anti-transglutaminase antibodies. This result was observed despite strong adherence by most patients to the diet as evidenced by normalized anti-transglutaminase antibodies, indicating a successful immune response.

30% of the patients showed persistent or worsening symptoms following gluten-free diet. ¹

14 Gluten-containing cereals” (wheat, rye, barley, oats, spelt, kamut, or their hybrid strains) and products made from these cereals are included on the list of 14 major allergens as defined by European food labeling regulations. ⁵

Persistent symptoms

Most notably, 1 in 3 patients reported persistent or even worsened gastrointestinal symptoms while on the gluten-free diet. 

These persistent symptoms may be linked to specific alterations in the gut microbiota, independent of the immune response to gluten.

(sidenote: Branched-chain fatty acids Appeared to correlate with symptoms, and the persistence of symptoms was associated with microbiota composition (particularly with respect to the Bifidobacterium, Alistipes and Ruminococcus genera).
Although the gluten-free diet remains the only current treatment for celiac disease, it disrupts the microbiota and does not fully resolve symptoms. As a result, the authors suggest combining the diet with targeted prebiotics and/or synbiotics to counteract these negative effects.
)
appeared to correlate with symptoms, and the persistence of symptoms was associated with microbiota composition (particularly with respect to the Bifidobacterium, Alistipes and Ruminococcus genera).

Although the gluten-free diet remains the only current treatment for celiac disease, it disrupts the microbiota and does not fully resolve symptoms. As a result, the authors suggest combining the diet with targeted prebiotics and/or synbiotics to counteract these negative effects.

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News Nutrition

Celiac disease: “gluten-free”, no easy ride for the gut

For people with celiac disease, one year on a gluten-free diet does improve overall well-being – but it also depletes the gut microbiota, and 1 in 3 patients continue to suffer from gastrointestinal symptoms. Could pairing it with prebiotics and synbiotics be the solution?

The gut microbiota Diet: a key factor Celiac disease

When you have (sidenote: Celiac disease A disease caused by a malfunction of the immune system, which mistakenly attacks normal components of the body – in this case, the small intestine. It is triggered by the ingestion of gluten in genetically predisposed individuals. ) , there is no debate: (sidenote: Gluten Gluten (from Latin glue): a viscous nitrogenous substance formed when flour is hydrated. It originates from specific proteins – glutenins and gliadins – found in cereals, primarily wheat. ) has to go. But what really happens inside the gut after a year on this diet? What are the effects on the gut microbiota? Do symptoms persist? A recent UK study 1 took a closer look at these questions.

1% Prevalence of celiac disease in the general population ranges from 0.5% to 2%, with an average of about 1%. ²

2 to 3 As with other autoimmune diseases, celiac disease is more common in women, who are affected 2 to 3 times more frequently than men. ³

Before going gluten-free, both gut and patient suffer

Before starting their gluten-free diet, patients with celiac disease already show significant differences: low mood, digestive symptoms and less hydrated stools – despite water content in the small intestine being unusually high. In particular, intestinal transit is much slower. The likely culprits? Mucosal lesions in the intestinal wall, which affect water absorption and secretion, and probably also chronic inflammation and some hormonal imbalances in the digestive system.

Digestive disorders

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One year gluten-free: better, but far from perfect

Good news first! After one year on a gluten-free diet, patients generally feel better. Anxiety is reduced and gut transit accelerates slightly. But it’s not a cure-all; their well-being still lags behind that of people without celiac disease, and some continue to experience celiac-related symptoms.

The diet also takes a toll on the microbiota, in other words the community of bacteria living in our intestines. Removing wheat and its by-products (bread, pasta, biscuits, etc.) cuts out not only gluten, but also the fibers derived from this cereal and consequently the beneficial bacteria like Bifidobacteria that feed on these fibers. Instead, this diet seems to stimulate the bacteria associated with protein breakdown, such as E. coli and Peptostreptococcus, which we’d rather not encourage.

Gluten

In Europe, the mean consumption of gluten is 10 g to 20 g per day, with segments of the general population consuming as much as 50 g of daily gluten or more. 4

Gluten-containing cereals” (wheat, rye, barley, oats, spelt, kamut, or their hybrid strains) and products made from these cereals are included on the list of 14 major allergens as defined by European food labeling regulations. 5

30% of celiac patients reported persistent or worsening symptoms after one year on a gluten-free diet. 1

Celiac disease, wheat allergy, hypersensitivity to gluten: know the difference! 6,7

Gluten is not “toxic” for the general population; it is well tolerated by most people. However, it’s involved in two very different conditions:

  • Celiac disease: an autoimmune disorder (the immune system attacks its own body) that occurs weeks to years after gluten exposure. It causes lesions in the small intestine lining. It is diagnosed by the presence of auto (sidenote: Antibodies Antibodies are described in the study as key biological markers for diagnosing and monitoring celiac disease. ) in the blood;
  • Wheat allergy: a classic allergic reaction that occurs within minutes or hours after contact with gluten or other wheat proteins. It triggers an immune response on the part of the body along with the release of histamine. Prevalence varies from 0.5% to 9% in children and 0.4% to 1% in adults, depending on the study.

Hypersensitivity to gluten

In addition to wheat allergy and celiac disease, some individuals experience gluten reactions that are neither allergies nor celiac disease in terms of the mechanisms involved, occurring within hours or days of exposure.

These reactions are currently referred to as “non-celiac gluten sensitivity” (NCGS), “gluten sensitivity” or, in French contexts, “hypersensitivity to gluten” or “gluten intolerance.”  The existence of NCGS remains controversial, largely due to the lack of diagnostic biomarkers able to objectively confirm it.

Unless one of these conditions is medically diagnosed, gluten exclusion is not recommended.

What if the diet isn’t enough?

Another striking finding: 1 in 3 patients report persistent or even worsening gastrointestinal symptoms despite strict gluten avoidance. Specific fatty acids and the presence of certain bacteria in the gut microbiota may explain the persistence of these symptoms.

While strict gluten elimination remains essential for managing celiac disease, this study shows that it’s not always enough. The next step may be to include targeted (sidenote: Prebiotics Prebiotics are specific indigestible dietary fibres which have effects that are favourable to health. They are used selectively by the beneficial micro-organisms in the microbiota of individuals. Specific products combining probiotics and prebiotics are known as symbiotics. Gibson GR, Hutkins R, Sanders ME, et al. Expert consensus document: The International Scientific Association for Probiotics and Prebiotics (ISAPP) consensus statement on the definition and scope of prebiotics. Nat Rev Gastroenterol Hepatol. 2017;14(8):491-502. Markowiak P, Śliżewska K. Effects of Probiotics, Prebiotics, and Synbiotics on Human Health. Nutrients. 2017;9(9):1021. ) (fibers that nourish good bacteria) or synbiotics (blends of pre- and probiotics), to help support a healthier microbiota – and potentially greater digestive comfort. This could benefit even those patients whose antibody levels have normalized, which is a marker of effective immune response to the diet.

What is the difference between prebiotics, probiotics and postbiotics?

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Microbiota in motherhood: fertility to postpartum

From trying to conceive to postpartum recovery, a woman’s health is deeply connected to her microbiota (gut, vaginal, skin, and breast milk). Can microbial imbalances affect fertility or increase miscarriage risk? Do delivery mode and lifestyle during pregnancy influence both the mother's and baby’s health? How does the gut-brain axis shape postpartum mental well-being?

Backed by science, this section explores how each stage of motherhood fertility, pregnancy, and the first days after birth is shaped by these invisible ecosystems. A new frontier in maternal health is here.

Microbiota's role in women's fertility

The microbiota plays a crucial role in female fertility, influencing conception and pregnancy. How do imbalances in the vaginal, gut, and other microbiota affect reproductive health? Explore the latest research on how these microbial communities impact fertility.

Support fertility

The microbiota plays a crucial role in female fertility. Recent research explores how the vaginal and gut microbiota impact conception and pregnancy. Can balancing these microbiota improve reproductive health and fertility outcomes for women?

Information on infertility

Research shows that microbiota imbalances, especially in the vaginal and gut microbiota, may impact fertility. How do these microbial changes affect fertility, and what new insights are shaping our understanding and treatment of infertility?

Endometriosis & fertility

Emerging research reveals that imbalances in the gut, vaginal, and endometrial microbiota collectively known as dysbiosis may contribute to endometriosis and its associated fertility challenges. These microbial shifts can influence inflammation, estrogen metabolism, and immune responses, potentially impacting reproductive health.

Understanding the role of microbiota offers new avenues for diagnosing and managing endometriosis-related infertility. Learn more

Microbiota during pregnancy

Can the microbiota shape the course of pregnancy? From in utero communication between mother and baby to risks like miscarriage or preterm birth, maternal gut and vaginal microbiota play a crucial role. Diet, exercise, hygiene, and even delivery mode (C-section or vaginal birth) influence this delicate balance impacting both maternal well-being and the baby’s long-term health.

Discover how science sheds light on the mysteries of microbiota and pregnancy.

Baby/mother communication in utero

How do maternal gut and vaginal microbiota “talk” to the baby before birth? From immune system priming to metabolic signals, discover how this invisible dialogue shapes fetal development and lays the foundation for lifelong health even before the first breath.

Microbiota, pregnancy and birth outcomes

Can the microbiota impact miscarriage, gestational diabetes, or preterm birth? Discover how vaginal and gut microbiota influence pregnancy outcomes, and how imbalances may increase the risk of complications all backed by the latest scientific research.

Pregnancy lifestyle

How do diet, exercise and hygiene support a healthy pregnancy? From nourishing the gut to balancing the vaginal microbiota, discover how simple daily habits can nurture both mother and baby starting with the invisible ecosystem shaping them both.

Delivery mode impacts

Can birth mode shape a baby’s microbiota? Vaginal delivery and C-section expose newborns to different microbes, with lasting effects on health. Learn how breastfeeding and early care can support the infant microbiota right from the first moments of life.

Postpartum and microbiota

How do microbiota shape perinatal health for both mother and baby? From the first 1000 days of life crucial for immunity, neurodevelopment, and emotional balance to the role of breastfeeding in supporting gut, skin, and ENT microbiota, and the impact of the gut-brain axis on postpartum mental health, discover how a balanced microbiota can become a powerful ally in this unique life stage. Science now reveals just how vital these tiny organisms are right from the very beginning.

Breastfeeding

How does breastfeeding influence infant microbiota? From reducing C-section impacts to supporting gut, skin, and ENT microbiota, explore how breast milk shapes immunity, allergy risk, and development especially in preterm infants. A closer look at what the science reveals.

Mother and baby's first days and their microbiota

Why are the first 1000 days so critical? From immunity and neurodevelopment to mood and microbiota balance, early life is shaped by gut microbes those of the baby, the mother, and even the father. Discover how this invisible legacy builds lifelong health from day one.

Postpartum mental health

How do gut microbiota influence a woman’s mental health after birth? In the postpartum period, changes in the gut-brain axis may impact mood, anxiety, and depression. Explore how microbial balance plays a role in supporting women’s emotional well-being during this key transition.

What women know (and don't know)

about their vaginal microbiota

What is the link between microbiota and women’s health? The International Microbiota Observatory, based on a survey of 7,500 people across 11 countries, explores women’s knowledge, perceptions and behaviours of their gut, vaginal, and urinary microbiota. The 2024 edition reveals a global lack of awareness, growing interest in the role of microbiota in hormonal, digestive, and intimate health, and a strong demand for better prevention, education, and support. Dive into the full report to discover key insights, data highlights, and what women worldwide really know about their microbiota.

Discover the 2024 International Microbiota Observatory survey

Explore the results
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