Your breast milk is feeding your baby's microbiome

Your breast milk is not just food, it is a living ecosystem. Every feed delivers bacteria straight into your baby’s gut. New science now shows exactly which ones arrive, take hold, and shape your child’s health from the inside out.

The gut microbiota

You already know breast milk is remarkable. But scientists have just revealed something that goes deeper than nutrition: your milk is alive with bacteria, and those bacteria travel directly into your baby’s gut, take up residence, and begin shaping their health within the first weeks of life.
A major new study 1 in Nature Communications, following 195 mother-baby pairs across six months, used technology powerful enough to tell individual bacterial “fingerprints” apart, and traced them, one by one, from milk to baby.

The tiny resident that holds everything together

Among all the bacteria scientists found, one stood out: Bifidobacterium longum. It was present in the guts of 98 out of every 100 babies at one month of age.
But what makes it remarkable is not just how common it is, it’s what it does. Babies whose guts were dominated by this species, especially a subspecies called B. longum subsp. infantis, had a gut microbiome that held remarkably steady over the following months.
It settled, rather than swinging. Why? Because this bacterium has evolved a special ability to break down the natural sugars in breast milk, sugars that exist, it now seems, precisely to feed it.

The longer mothers breastfed exclusively, the more this species flourished. Babies who stopped earlier showed less stable communities taking hold. What you feed your baby shapes who moves in, and who stays.

Disclaimer

At the Biocodex Microbiota Institute, we recognize that breastfeeding, including prolonged breastfeeding, is not always possible or suitable for every mother and family. This article is intended to share the latest scientific findings on the subject, while respecting the diversity of feeding journeys and individual circumstances.

From your milk to their gut: a direct line of inheritance

Here is where the research becomes genuinely astonishing. Using a technique that can tell apart bacterial “twins”, strains so similar they look identical to standard tests, scientists found something never confirmed before with this precision: the exact same strain detected in a mother’s breast milk was also found, weeks later, living in her baby’s gut. Not just a similar species. The same genetic identity. Your bacteria know your baby’s address, and they deliver themselves there.

They also discovered something unexpected about direction. Some shared bacteria were species normally found in the mouth, suggesting that when your baby feeds at the breast, microbes from their mouth travel back into the milk. Breastfeeding is not a one-way delivery. It is a conversation between two microbiomes, flowing in both directions with every feed.
Birth mode leaves its mark here too. Babies born vaginally retained their gut bacteria for significantly longer, their microbial community at six months looked more like it had at one month.
Babies born by C-section showed a more fluid picture, with fewer strains persisting. Neither is a verdict. But how a baby enters the world shapes the microbiome they carry through it.

Infant microbiota: could the drawbacks of a C-section be reduced by breastfeeding?

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The genes your baby was born carrying 

Every baby in the study, including the two-thirds who had never received a single antibiotic, carried genes linked to antibiotic resistance. This sounds alarming. It isn’t. These genes, known collectively as the resistome, are a normal, ancient feature of the human gut, far older than antibiotics themselves. What scientists set out to understand was simply: where does a newborn’s resistome come from?

Resistome

The collection of antibiotic resistance genes living in a microbiome. Ancient and normal, these genes existed long before antibiotics were developed. Babies carry them from birth. What this study shows is that breastfeeding helps keep them in check.

The answer, in significant part, is breast milk. Mothers and their babies shared far more resistance genes with each other than unrelated pairs did, clear evidence that feeding is a transmission route. But here is what matters most: babies whose guts were dominated by Bifidobacterium, exactly the bacteria that breast milk cultivates, carried substantially fewer resistance genes than those with other microbial communities. 

Breastfeeding doesn’t just build a thriving microbiome. It actively displaces a less desirable one. Every feed is, in the most literal biological sense, an act of protection.

Antibiotics: what impact on the microbiota and on our health?

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Does breast milk wire the infant resistome?

Breastfeeding is universally recommended. But which live bacteria does milk actually transmit, and can they reshape the infant gut resistome? Strain-level metagenomics now answer both, with direct implications for perinatal counselling.

Breastfeeding guidance has long rested on binary choices: breast vs. formula. A landmark study in Nature Communications by Ferretti, Allert et al. dissolves that simplicity entirely 1.

Using (sidenote: Shotgun Metagenomics This is a high-resolution sequencing method that analyzes all the genetic material from every microbe in a sample. Unlike older techniques that just identify bacterial families, it allows for precise identification down to the species level and reveals the functional genes those bacteria possess. ) on 507 samples from 195 mother–infant pairs, the team tracked bacteria not just at species level but at strain level; the genetic resolution required to prove transmission, not merely infer it. What they found reframes breastfeeding as an active, strain-specific microbial intervention with measurable consequences for the infant (sidenote: Resistome The complete set of antimicrobial resistance genes (ARGs) harbored by a microbiome. In this study, the infant gut resistome was significantly shaped by maternal breast milk, even in antibiotic-naive infants. ) .

When one species holds the microbiome together

Bifidobacterium longum was present in 98.2% of infant stool samples at one month, but prevalence alone understates its role. Infants whose guts were dominated by B. longum, and particularly by its subspecies B. longum subsp. infantis, maintained significantly more stable microbiome composition between one and six months than those dominated by other species.
The mechanism is specific: B. longum subsp. infantis carries the enzymatic machinery to degrade human milk oligosaccharides (HMOs), giving it a decisive competitive advantage in the breastfed gut.
Its mean relative abundance surged from 3.2% at one month to 23.8% at six months. Infants with non-bifidobacteria-dominated guts showed the most volatility.

The clinical read: breastfeeding duration is not just a nutritional variable; it is a determinant of microbiome architecture.

Twelve confirmed transmissions, and what they reveal about the gut–milk axis

Twelve instances of strain-level sharing between maternal milk and infant gut; same species, identical genetic fingerprint; demonstrate that breast milk is a bona fide transmission route.
Shared taxa spanned commensals (B. longum, B. bifidum), gut-associated species (Phocaeicola vulgatus), and typical oral residents such as Streptococcus salivarius and Rothia mucilaginosa, the latter two suggesting retrograde colonisation from the infant’s oral cavity back into the milk during suckling, a biologically plausible bidirectional axis.

Most notable was the detection of Klebsiella pneumoniae as a confirmed shared strain. No infants showed clinical manifestations, consistent with silent commensal carriage; nonetheless, this finding signals that culture-independent, strain-level milk surveillance may add meaningful risk stratification in high-risk neonatal settings beyond what standard culture screens can offer.

Delivery mode compounds this picture: 19.4% of infant gut strains at one month persisted to six months, and vaginally born infants retained significantly more of them than those born by C-section (p = 0.018), evidence that birth mode shapes not just early colonisation, but the durability of the microbial community across the first half-year of life.

Antibiotics and cesarean delivery: how do they affect the newborn microbiota?

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The resistome is inherited and breastfeeding can modulate it

Every infant carried antibiotic resistance genes (ARGs) at one month, including the 67% who had no recorded pre-, peri-, or postnatal antibiotic exposure. Resistance classes for tetracycline, MLS (macrolide-lincosamide-streptogramin), aminoglycoside, and beta-lactams were all present. This is not a signal of clinical failure; it is the baseline ecology of the human neonatal gut, assembled through mechanisms independent of antibiotic selective pressure and largely invisible to standard clinical workups.

What this study adds is the transmission axis and, critically, a modifiable countermeasure. Mother–infant pairs shared significantly more ARGs than permuted pseudo-pairs (p < 0.016).The dominant shared genes were MACB (MLS class), ACRD (aminoglycoside), and TETQ (tetracycline). Sharing was highest in the two pairs with confirmed strain transmission events, providing a mechanistically coherent explanation. Yet infants with bifidobacteria-dominated guts carried markedly fewer ARGs than those dominated by other species (p = 7.6×10−10).

The implication for practice is direct: supporting Bifidobacterium colonisation through exclusive breastfeeding and, where indicated, B. longum subsp. infantis-containing probiotics does not only enrich the microbiome, it also suppresses the resistome.

Clinicians now have strain-level, resistome-level evidence that the how and how long of breastfeeding counselling carries consequences that extend well beyond nutrition.

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Vitiligo: the gut microbiota at the heart of skin oxidative stress

The gut microbiota may play an important role in the onset and progression of vitiligo. Hippuric acid, a metabolite produced by the microbiota, may be a key mediator of oxidative stress… and a potential biomarker or even a therapeutic target?

Vitiligo, an autoimmune skin disease, is characterized by the destruction of melanocytes, leading to depigmented patches. However, cutaneous oxidative stress—a key factor in the progression of the disease—appears to be influenced by the gut microbiota. Here’s a breakdown of a study that examines the mechanisms at work.1

Oxidative stress linked to the gut microbiota

The first step in the researchers’ work involved analyzing lesions in patients and in a mouse model. This revealed, in the depigmented areas, an overexpression of genes associated with oxidative stress and responses to reactive oxygen species (ROS). This confirms that these processes are crucial in the pathogenesis of the disease.

Next step: the researchers discovered that mice with vitiligo exhibit a significant accumulation of ROS in the skin, as well as mitochondrial abnormalities in their melanocytes. Eliminating the gut microbiota with antibiotics reduced the abnormal accumulation of ROS and the mitochondrial abnormalities in the melanocytes, resulting in a significant improvement in depigmentation. Thus, the gut microbiota appears to directly regulate the skin’s oxidative stress status.

Vitiligo around the world

  • The global lifetime prevalence of vitiligo diagnosed by a physician or dermatologist is estimated at 0.36% in the general population, 0.67% in the adult population, and 0.24% in the pediatric population.2
  • Among adults, prevalence estimates range from 0.43% in East Asia to 0.98% in Central Europe.2
  • Among children, the prevalence of vitiligo ranges from 0.16% in East Asia to 0.35% in South Asia and 0.35% in Central Europe.2
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From the gut microbiota to the skin

Subsequent research by scientists shows that the microbiota of mice with vitiligo is imbalanced (increased Clostridiales, decreased Verrucomicrobiae). Transferring this dysbiotic microbiota (through cohabitation of animals or fecal transplantation) exacerbates depigmentation. Conversely, administering probiotics slows the progression of the disease, suggesting a potential therapeutic approach.

But how is the gut microbiota linked to the skin? Metabolomic analysis of fecal, blood, and skin tissues from mice identified a key factor: hippuric acid, a metabolite derived from the microbiota, accumulates excessively in the feces, serum, and skin of mice with vitiligo. Injections of hippuric acid are sufficient to reproduce the accumulation of ROS and exacerbate depigmentation in mice. And in humans? Serum levels of hippuric acid are found to be higher in patients with vitiligo.

A mechanistic hypothesis

This leads to the following hypothesis: in mice with vitiligo, the intestinal mucosal barrier is weakened (due to a reduction in goblet cells responsible for mucus production and a decrease in mucosal thickness), which increases intestinal permeability. This increased permeability would facilitate the passage of hippuric acid into the bloodstream and then to the skin. Hippuric acid would induce oxidative stress by directly binding to two proteins (NOS2 and MAPK14); this direct molecular interaction would then promote the production of ROS in skin tissues.

Thus, intestinal dysbiosis would orchestrate cutaneous oxidative stress in vitiligo via hippuric acid. These results also suggest that probiotics may play a role in slowing the progression of the disease.

Gut bacteria turn stress hormones into progestins hormones: a surprising role for hydrogen gas

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How the gut microbiome affects sleep quality

The gut microbiota and sleep interact with each other in both directions through metabolic, neural, and immune pathways. Does this open the door to new therapeutic strategies for sleep disorders?

The Gut-Brain axis

What if there is a bidirectional relationship between sleep and the gut? To go beyond simple correlational studies1, this review delves into the literature on the microbiota-gut-brain axis and its role in sleep regulation to summarize the potential mechanisms linking the composition and function of the gut microbiota to sleep disorders.

18% The estimated prevalence of obstructive sleep apnea (OSA) in the adult population is 18%.

10% The estimated prevalence of insomnia in the adult population is 10%.

3% The estimated prevalence of restless legs syndrome (RLS) in the adult population is 3%.

Sleep Disorders and the Gut-Brain Axis

Different sleep disorders are associated with changes in the composition of the gut microbiota and its metabolites:

- Insomniacs show reduced microbial diversity, with (though results vary by study) a decrease in the abundance of certain bacteria (such as Ruminococcaceae) correlating with a decrease in their metabolites (fewer secondary bile acids, produced by bacteria from liver bile acids).

- There is also less diversity in patients suffering from obstructive sleep apnea, and (sidenote: Fecal Microbiota Transplantation (FMT) A therapeutic procedure to restore the gut microbiota by transferring fecal bacteria from a healthy donor to a recipient. Explore https://www.science.org/doi/10.1126/scitranslmed.abo2750 ) from individuals suffering from hypoxia can disrupt the sleep cycles of healthy animals.

- Night work and jet lag also cause significant changes in the microbiota, increasing intestinal permeability and inflammation. 

- Narcolepsy may be associated with an imbalance between immunosuppressive and immunostimulatory microorganisms.

- In the case of restless leg syndrome, the multiplication of bacteria in the small intestine may play a role.

Dysbiosis is also observed in sleep-related disorders: in major depressive disorders, the composition of the gut microbiota is associated with sleep quality; in Parkinson’s disease, (sidenote: Mendelian randomization An approach that exploits natural genetic variation to test causal relationships between a biological factor (e.g., cholesterol, vitamin D, BMI) and a disease (e.g., heart attack). Researchers use genetic variants associated with the biological factor of interest (e.g., patients with alleles that increase LDL cholesterol vs. patients without) to test whether there is a causal relationship between the biological factor (LDL cholesterol) and the disease (heart attack). The random distribution of alleles in the population reduces biases (confounding factors, etc.), mimicking some of the advantages of a randomized trial. ) studies suggest a causal link with gut bacteria; in Alzheimer’s disease, sleep disturbances are directly related to the accumulation of beta-amyloid protein, in parallel with changes in the bacterial flora that could be potential diagnostic and even therapeutic biomarkers.
 

0,03% The estimated prevalence of narcolepsy in the adult population is 0.03%.

>50% More than one in 2 people with dementia (including Alzheimer’s disease) suffer from insomnia.²

Two-way communication

The review also highlights three main bidirectional communication pathways through which the gut-brain-microbiota axis coordinates sleep:

- Metabolic and endocrine pathways: secondary bile acids and (sidenote: Short chain fatty acids (SCFA) Short chain fatty acids (SCFA) are a source of energy (fuel) for an individual’s cells. They interact with the immune system and are involved in communication between the intestine and the brain. Silva YP, Bernardi A, Frozza RL. The Role of Short-Chain Fatty Acids From Gut Microbiota in Gut-Brain Communication. Front Endocrinol (Lausanne). 2020;11:25. ) produced by bacteria affect sleep through systemic circulation. In addition, the microbiota produces or regulates key molecules of the wake-sleep cycle, such as GABA, serotonin, tryptophan and melatonin.

- Neural pathways: gut bacteria and their metabolites interact with the gut nervous system and cooperate with vagal nerve pathways, influencing brain areas and circuits related to sleep. In addition, the microbiota and its metabolites modulate the stress response and the corticosterone rhythm, influencing wakefulness-related hyperactivity.

- Immune pathways: Sleep deprivation triggers systemic and gut inflammation, weakening the gut barrier and affecting the central nervous system.

Did you know?

  • In high-income European countries, obstructive sleep apnea (OSA) is the most costly sleep disorder (€184 billion), followed by insomnia (€158 billion), restless legs syndrome (RLS) (€79 billion), narcolepsy (€905 million) and REM sleep behavior disorder (RBD) (€436 million). Direct and indirect costs account for 48% and 52% of the total, respectively, with no data available on informal care costs.3

  • Sleep disorders are very common in people with Parkinson’s disease, with up to 98% of patients experiencing them at some point. REM sleep behavior disorder (RBD) is seen in about 46% of patients with Parkinson’s disease.

  • Restless legs syndrome (RLS) affects 15-20% of patients with Parkinson’s disease, although early-onset RLS does not predispose to the later development of Parkinson’s disease. However, severe RLS may be an early warning sign of the disease. 

Modifying the Microbiome to Improve Sleep

Since traditional methods of treating sleep disorders often involve side effects, microbiome-targeted therapies represent promising strategies:

Is science heading towards precision medicine in the field of sleep?

 

The gut microbiota and sleep disorder: a therapeutic approach based on modulation of the microbiota?

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A Gut Metabolite May Predict CAR-T Success

We know antibiotics harm CAR-T outcomes. But why? New multicenter data reveals the gut microbiota, specifically butyrate-producing bacteria, drives therapy success in non-Hodgkin lymphoma. Circulating butyrate emerges as both biomarker and potential therapeutic enhancer, reshaping how we prepare patients for cellular therapy.

The gut microbiota has emerged as a critical modulator of cancer immunotherapy, but its precise mechanisms in CAR-T cell therapy have remained elusive. A compelling multicenter study1 published in Clinical Cancer Research now demonstrates that a specific microbial metabolite, (sidenote: Butyrate A short-chain fatty acid produced by gut bacteria through fermentation of dietary fiber. ) , may represent both a prognostic biomarker and a potential therapeutic lever for patients with Non-Hodgkin Lymphoma (NHL) undergoing CD19 CAR-T treatment.

When antibiotics disrupt more than infection

The study enrolled 84 NHL patients across four centers and confirmed what recent American and German cohorts suggested: non-prophylactic antibiotic exposure before CAR-T infusion significantly impairs progression-free survival. Patients receiving two or more lines of non-prophylactic antibiotics showed markedly worse outcomes, with high-risk antibiotics including meropenem, cefazolin, ceftriaxone, and piperacillin-tazobactam demonstrating the strongest negative associations.

Researchers from Hospital 12 de Octubre didn't stop at correlation; they examined the mechanism. Through (sidenote: 16S rRNA sequencing A method that reads a bacterial “barcode” gene to identify and differentiate species. ) of stool samples collected at lymphapheresis, they found that antibiotic-exposed patients had significantly lower (sidenote: Microbiota diversity The variety and evenness of bacterial species within the gut ecosystem, measured by indices such as Shannon and Pielou. ) indices. Critically, lower diversity itself predicted worse survival, creating a mechanistic chain from antibiotic use through dysbiosis to clinical failure.

Short-chain fatty acids emerge as the missing link

Taxonomic analysis revealed a striking pattern: responders to CAR-T therapy harbored significantly higher relative abundances of (sidenote: SCFA-producing bacteria Bacterial taxa that metabolize dietary substrates into short-chain fatty acids including acetate, propionate, and butyrate.  ) . Specifically, taxa including Prevotella, Ruminococcus, Butyricicoccus, and the Clostridiaceae family were enriched in patients achieving complete or partial responses. Non-responders, conversely, showed elevated lactic acid bacteria including Lactobacillales and Enterococcus. The functional consequence became clear when researchers measured serum metabolites. Patients with higher circulating butyrate at baseline demonstrated superior progression-free and overall survival. A multivariate analysis confirmed butyrate as an independent prognostic factor, with low levels conferring a more than six-fold increased hazard of progression.

Butyrate reprograms CAR-T cells for enhanced killing

To validate butyrate's direct role, investigators exposed CAR-T cells to physiologically relevant concentrations in vitro. Butyrate-stimulated CAR-T cells showed increased activation marker expression, higher transduction efficiency, and a shift toward central memory phenotypes, characteristics associated with superior persistence. 

Functionally, these cells generated significantly greater specific lysis of lymphoma targets at multiple effector-to-target ratios. Whole transcriptome sequencing revealed upregulation of 145 genes involved in cytotoxicity, chemokine responsiveness, and T cell proliferation, while senescence-associated genes were downregulated. Pathway enrichment analysis confirmed enhanced inflammatory signaling and cytotoxic function. Remarkably, oral butyrate supplementation in a xenograft mouse model significantly reduced tumor burden and extended survival compared to controls, demonstrating in vivo proof of concept. 

The takeaway for this isn't to immediately supplement all patients, but to recognize that the microbiota-butyrate axis represents a modifiable determinant of CAR-T efficacy worthy of prospective evaluation.

Antibiotics disrupt cancer immunotherapy via gut and immune effects

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Source

1. García-Vicente R, et al. The Potential of the Gut Microbiota and Butyrate to Enhance CAR-T Cell Therapy in Non-Hodgkin Lymphoma. Clin Cancer Res. 2025. https://doi.org/10.1158/1078-0432.CCR-25-1676

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Gut bacteria linked to liver cancer risk?

We link liver cancer to viral hepatitis, alcohol, and metabolic disease. Yet a 12-cohort study reveals that gut barrier dysfunction, detectable years before diagnosis via bacterial translocation markers, independently predicts liver cancer. This gut-liver axis mechanism reshapes our understanding of hepatocarcinogenesis.

Liver cancer development has been primarily attributed to well-established risk factors including viral hepatitis, excessive alcohol consumption, and metabolic conditions. However, a groundbreaking nested case-control study published in the International Journal of Cancer examined 867 liver cancer cases and 867 matched controls across 12 United States cohorts, revealing that immunological markers of (sidenote: Bacterial translocation The passage of viable bacteria or bacterial products such as lipopolysaccharide and flagellin across the intestinal barrier into systemic circulation. When gut barrier function is compromised, bacterial translocation triggers immune activation and chronic inflammation that may contribute to hepatocarcinogenesis. ) , measured an average of 12 years before diagnosis, are independently associated with liver cancer risk1.

The gut barrier under scrutiny

The gut barrier serves a critical dual function, allowing nutrient absorption while preventing translocation of harmful bacterial products into systemic circulation. Researchers from multiple institutions measured pre-diagnostic serum concentrations of (sidenote: Lipopolysaccharide-binding protein An acute-phase protein primarily synthesized by hepatocytes that binds to lipopolysaccharide from gram-negative bacteria to form an LPS-LBP complex. ) , (sidenote: Soluble CD14 A co-receptor protein that recognizes the LPS-LBP complex and facilitates immune signaling to trigger inflammatory responses. ) , and antibodies against lipopolysaccharide and flagellin. These markers reflect the body's response to gut-derived bacterial products that have breached the intestinal barrier.

LBP, an acute-phase protein synthesized primarily by hepatocytes, binds to lipopolysaccharide from gram-negative bacteria and forms complexes recognized by soluble CD14, triggering inflammatory cascades. The most striking finding was that LBP concentrations showed the strongest association with liver cancer risk, with an odds ratio of 1.48 per doubling in concentration. Anti-flagellin IgA and IgG, anti-lipopolysaccharide IgG, and soluble CD14 were also positively associated with risk.

Hepatocellular carcinoma versus cholangiocarcinoma

When analyses were stratified by liver cancer subtype, a critical distinction emerged. LBP concentrations were positively associated with hepatocellular carcinoma with an odds ratio of 1.77 per doubling, but showed no association with intrahepatic cholangiocarcinoma with an odds ratio of 0.67. This finding suggests potential specificity in the bacterial translocation pathway for hepatocellular carcinoma development.

Animal models have previously demonstrated that lipopolysaccharide accumulation activates (sidenote: Toll-like receptor 4 A pattern recognition receptor that recognizes lipopolysaccharide and initiates inflammatory signaling pathways. Animal studies have shown that TLR4 activation by bacterial lipopolysaccharide promotes hepatic inflammation and accelerates hepatocellular carcinoma development, providing a mechanistic link between bacterial translocation and liver cancer. ) signaling, promoting hepatic inflammation and tumor formation. The prospective nature of this study, with biomarkers measured years before diagnosis, suggests that LBP elevation represents an early etiological factor in hepatocarcinogenesis rather than merely a consequence of underlying liver disease. Associations were generally consistent across subgroups and remained significant even after excluding participants with hepatitis B or C infection.

The findings highlight the (sidenote: Gut-liver axis The bidirectional relationship between the gastrointestinal tract and the liver, mediated by the portal venous system that carries nutrients and bacterial products from the gut to the liver. ) as a modifiable pathway in liver cancer development, necessitating further investigation into interventions that maintain gut barrier integrity.

Bacterial metabolites and immunotherapy effectiveness

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When your beauty routine kills certain bacteria

The use of moisturizers and sunscreens is associated with changes in the skin microbiota that lives on the surface of your skin and contributes to its health.

The skin microbiota

The skin is a vital barrier: it protects our bodies from the sun's harmful ultraviolet rays, various chemicals we come into contact with, and microorganisms we encounter. To help it perform this task, it hosts skin microbiota, a collection of microorganisms that play a key role in our immunity. But what effect do the moisturizers and sunscreens we regularly apply to this tiny world have?
To identify and understand the influence of these routines on our skin microbiota and skin health, a team of researchers studied the faces of 10 men and 27 women1.

Your beauty routine changes your microbiota

When it comes to skin, we all have things in common (such as hosting bacteria like Cutibacterium acnes and Staphylococcus epidermidis, according to the skin of the 37 participants in this study), and differences (a highly variable diversity of species living on our epidermis). Our facial skincare routine seems to have a significant impact on this tiny world: the relative abundance of skin microbiota species is higher in participants who only use moisturizer compared to those who use a combination of moisturizer and sunscreen. Certain bacterial species also seem to depend on skincare routines: if you double up on skin hydration with sunscreen, you are likely to promote bacteria such as Corynebacterium sanguinis and Brachybacterium nesterenkovii.

Some figures on skin diseases

  • 4.69 billion cases of skin and subcutaneous tissue disorders, responsible for 41.9 million disability-adjusted life years, were recorded worldwide in 20212.
     
  • Skin and subcutaneous diseases are forming one of the top 10 causes of disability2.
     
  • Most of the skin diseases burden in any community is caused by about 10 common general skin diagnoses and that, with the essential medicines, the right training and support, local health teams could effectively care for these patients2.
     
  • On February 10, 2025, skin diseases were declared a global public health priority by the World Health Organization (WHO)3.

Effect of sun exposure

Another factor that greatly influences this microscopic world on your skin is sun exposure, which is enough to alter the abundance of beneficial microorganisms, such as Malassezia restricta yeast or S. epidermidis bacteria. Do you enjoy sunbathing and regularly use moisturizer? Your lifestyle probably promotes the growth of protective species such as S. epidermidis, which keep pathogens such as S. aureus at bay. And when we talk about the sun, we inevitably think of hyperpigmentation: according to this study, the use of sunscreen appears to be unrelated to the bacteria associated with hyperpigmentation (Corynebacterium spp.). These results still need to be confirmed in larger cohorts.

One thing is certain: when you apply your moisturizer or sunscreen tomorrow, you will spare a thought for the tiny bacteria, fungi, and other viruses that discreetly coexist on the surface of your skin for your own good!

Feel good in your skin... and your skin microbiota

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Bacterial metabolites and immunotherapy effectiveness

It is not so much the intestinal bacterial species as their metabolic pathways that determine the effectiveness of immunotherapy in cancer treatment. Could this pave the way for therapies combining immunotherapy and biotics?

The gut microbiota

(sidenote: Immune checkpoint inhibitors (ICIs) Therapies that seek to remove the mechanisms that inhibit the immune system’s response to cancer cells. Targeted checkpoints include Programmed Death-1 (PD-1), Programmed Death-Ligand 1 (PDL-1), and cytotoxic T-lymphocyte associated protein 4 (CTLA-4). Lifting these brakes allows the immune system to recognize and attack cancer cells.
 
)
significantly improves cancer survival, but its effectiveness varies greatly from one patient to another. Studies have shown a link between certain gut bacteria and efficacy, but the species implicated are inconsistent from one study to another. What if it wasn't so much the species themselves as the metabolites they produce that made all the difference? This is the hypothesis, confirmed by a Dutch team1.

400 000 Each year, approximately 400 000 children develop cancer².

1/6 Cancer is a leading cause of death worldwide, accounting for nearly 10 million deaths in 2020, or nearly one in six deaths².

Bacterial species vary

Analysis of 781 fecal samples from cancer patients treated with ICB shows that bacterial species composition varies greatly between patients and between studies. Furthermore, bacterial diversity does not appear to be related to treatment response. Finally, the profile of the intestinal flora in terms of bacterial species does not allow for a clear distinction between responders and non-responders.

Top 6 (cases)²

The most common in 2020 (in terms of new cases of cancer) were:

  • breast (2.26 million cases);
  • lung (2.21 million cases);
  • colon and rectum (1.93 million cases);
  • prostate (1.41 million cases);
  • skin (non-melanoma) (1.20 million cases); and
  • stomach (1.09 million cases).

Metabolic dysbiosis is associated with poor prognosis

The results are quite different when we look at the metabolism of the gut microbiota rather than its bacterial composition. These functions are relatively stable between patients and between studies. Non-responders show more pronounced functional dysbiosis than responders. Furthermore, the closer the flora's metabolic profile is to that of a healthy control microbiota, the better the response to ICB.

These results are confirmed in a prospective cohort. Thus, an alteration in the metabolic functions of the gut microbiota appears to go hand in hand with a poor response to immunotherapy.

Top 5 (deaths)²

The most common causes of cancer death in 2020 were:

  • lung (1.80 million deaths);
  • colon and rectum (916 000 deaths);
  • liver (830 000 deaths); 
  • stomach (769 000 deaths); and
  • breast (685 000 deaths).

The pathways involved

Finally, the researchers identified various metabolic pathways involved in the response to treatment, including the methyl erythritol phosphate (MEP) pathway. This pathway, which is specific to bacteria, produces phosphoantigens (e.g., HMBPP) and activates Vδ2 lymphocytes involved in antitumor immunity. It is strongly associated with a better response to ICB in different types of cancer. The researchers provide mechanistic evidence: bacteria capable of producing HMBPP (an intermediate in the MEP pathway) stimulate the antitumor activity of Vδ2 T lymphocytes.

A reverse, inhibitory pathway has also been revealed: microbial production of riboflavin is associated with resistance to ICB, induces suppression of immunity mediated by another type of T lymphocyte (MAIT cells, Mucosal-Associated Invariant T cells) and is associated with lower survival rates.

Thus, the metabolic capacity of the microbiota appears to be a major determinant of response to ICB. Will understanding and modulating these microbial functions pave the way for new therapeutic interventions, combining microbiota and immunotherapy to improve the effectiveness of cancer treatments?

This one gut microbe could change the way cancer therapy performs

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Can sweeteners help us lose weight and maintain a healthy gut microbiota?

Somewhat controversial “light” products are once again under the spotlight. A recent European study suggests that sweeteners, when part of a balanced, low-sugar diet, may help facilitate weight loss without harming health or gut microbiota.

The gut microbiota

Can “light” products that use sweeteners help us lose weight? Opinions and scientific data differ and there is no clear answer to this question: some say they are harmful to health and microbiota, others that they are harmless, and others still that they are beneficial.

With more than a billion people obese and 43% of adults overweight worldwide1, the question has major implications.

Sweeteners: good or bad?

In a new study2, European scientists have attempted to provide some unequivocal answers. They studied the impact of sweetened products on weight loss maintenance, health (cholesterol, blood sugar, blood pressure, etc.), and microbiota.

For the study, they recruited 277 obese or overweight people who had recently lost an average of 10 kg following a 2-month low-calorie diet.
 

Taste without calories

Sweeteners are food ingredients that provide a sweet taste but have few or no calories and help us avoid the harmful effects of sugar (tooth decay, increased blood sugar, etc.)4.

  • “Intense” sweeteners include saccharin (E954), aspartame (E951), sucralose, acesulfame potassium (E950), and stevia extract, which are used in cookies, cakes, and beverages (sodas).
  • Polyols include maltitol (E965), isomalt (E953), lactitol (E966), mannitol (E421), sorbitol (E420), and xylitol (E967), which are often found in sugar-free confectionery, particularly chewing gum.

For 10 months, they were put on a balanced, healthy diet relatively low in sugary products, with less than 10% of energy derived from added sugars, as recommended by the World Health Organization.3 There were no restrictions on food quantity.

The participants were divided into two groups:

  • A “sweeteners” group in which all sweet foods and drinks contained sweeteners
  • A “sugar” group, in which these products contained real sugar.

The results?

No problematic effects

Firstly, all participants maintained a significant portion of their weight loss during the 10 months of eating without restriction, proving that a balanced diet helps us stay slim. However, the sweeteners group maintained an additional 1.6 kg of weight loss compared to the sugar group.

Secondly, their cardiometabolic health parameters improved temporarily, although the differences subsequently diminished. In any case, no harmful effects of sweeteners were observed.

Unexpected positive impact on microbiota

More interestingly, the microbiota of the sweeteners group was significantly enriched with bacteria that produce beneficial short-chain fatty acids ( (sidenote: Short chain fatty acids (SCFA) Short chain fatty acids (SCFA) are a source of energy (fuel) for an individual’s cells. They interact with the immune system and are involved in communication between the intestine and the brain. Silva YP, Bernardi A, Frozza RL. The Role of Short-Chain Fatty Acids From Gut Microbiota in Gut-Brain Communication. Front Endocrinol (Lausanne). 2020;11:25. ) ). In particular, the researchers noted the activation of certain metabolic pathways linked to better fat utilization and increased satiety. All these effects were potentially conducive to better weight control.

Only a few digestive symptoms (bloating, gas, loose stools, etc.) were observed in the sweeteners group.

For the authors, this study proves that the prolonged use of sweeteners as part of a healthy, low-sugar diet contributes to maintaining weight loss without any adverse effects on health or the gut microbiota.

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Sweeteners facilitate weight loss and are safe for microbiota

Accused of disrupting microbiota and metabolic health, sweeteners are the subject of new data. A large-scale European study has recently shed light on their real impact on weight and the gut microbiota.

Can low-calorie sweeteners such as aspartame, sucralose, or acesulfame be part of a diet for managing overweight or obesity? This topic is controversial.

Contradictory scientific data

While some studies have raised concerns that have led the WHO to advise against their use for weight loss and health improvement1, several long-term clinical trials suggest that these additives are at worst harmless and at best beneficial in these areas.

The same problem applies to microbiota: some studies suggest they have adverse effects on certain aspects of the gut microbiota linked to glycemic response, while others show the opposite, and still others show that it is mainly sugary drinks that impact microbiota and metabolites associated with diabetes risk.

29% The market share of calorie-free or low-calorie beverages in Europe.³

17.7% The reduction in added sugar content in beverages in Europe since 2015.³

A real-world study settles the matter

To try shed some light on the matter, a team of researchers recruited 341 overweight or obese individuals (average BMI of 31; 70% women, average age 47) living in Denmark, Greece, Spain, and the Netherlands. Their goal was to test the real effect of replacing sugar with sweeteners after weight loss.

The volunteers first followed a low-calorie diet for two months, then those who lost more than 5% of their body weight (277 people) adopted a healthy, balanced diet without quantity restrictions for the following 10 months.

Half of them consumed sweetened products instead of sugar-rich products (the “sweeteners” group); the other half received conventional sweetened products amounting to less than 10% of their total energy intake, in accordance with WHO recommendations (the “sugar” group).

The researchers analyzed changes in body weight and cardiometabolic markers in all participants, as well as the microbiota composition of a sample of 137 individuals from both groups.

Better weight maintenance and enriched microbiota

Published in Nature Metabolism2, the results show that participants lost an average of 10 kg on the low-calorie diet and that, in both groups, this loss was generally maintained during the 10 months of ad libitum dieting.

Interestingly, the sweeteners group achieved better results, maintaining an additional weight loss of 1.6 kg on average compared to the sugar group, demonstrating the benefits of sweeteners for those seeking to maintain weight loss.

The microbiota of the sweeteners group was also richer in bacteria that produce short-chain fatty acids ( (sidenote: Short chain fatty acids (SCFA) Short chain fatty acids (SCFA) are a source of energy (fuel) for an individual’s cells. They interact with the immune system and are involved in communication between the intestine and the brain. Silva YP, Bernardi A, Frozza RL. The Role of Short-Chain Fatty Acids From Gut Microbiota in Gut-Brain Communication. Front Endocrinol (Lausanne). 2020;11:25. ) ) and methane, which is associated with increased energy expenditure, greater satiety, and improved metabolic health. This is evidence that, contrary to what is commonly stated, sweeteners do not damage microbiota and may even lead to potentially beneficial changes.

There was a temporary improvement in certain cardiometabolic health markers, particularly cholesterol, although this improvement receded after 12 months. There was no deterioration in these markers.

Conclusion

This high-quality study (multicenter, long-term, real-world conditions, etc.) provides evidence that the prolonged use of sweeteners as part of a healthy, low-sugar diet can contribute to weight loss without adverse effects on cardiometabolic parameters or the gut microbiota.

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